ENST00000456327.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000456327.1

Source

Gencode19

Same with

lnc-SOX11-3:1,NONHSAT068824

Classification

intergenic

Length

1434 nt

Genomic location

chr2+:6072819..6120819

Exon number

5

Exons

6072819..6073053,6108718..6109370,6109462..6109618,6113441..6113561,6120552..6120819

Genome context

Sequence
000001 AGTCTGGCTG GAGCTGGACC GGCTGGTGGC GCCAGGCAGT GCCAAGCACC CCTGGCAGCC CTGCAGAGGG TTCTCAAATC 000080
000081 CAGATTTCAT TCTGCAGTCC CGGCAGTGTT TTGACGACTG CCTCACTAAA GGAAGCTAAA AGCTGTGCTG ATGCCTCCCA 000160
000161 GACGAGCCTC GTTGGAAGCA CAGAACCTTC ACGGCTCGGA GCCGCTGACA CCGTGACAAA GGGAGCCCTG CTCAGGAGAA 000240
000241 AGAGCAAATG AGAGGCAGTT GCACTTTTTC AGGTGTCAGG CTGGAGGAAG CCACTTGAAG ATGAATCTAC CTCTGCCTTA 000320
000321 GGATTGCCTG ATGGCCTGTG CCATTCCATG TTATATCTAC TGATTTGCTC CCTGTATTCA AAGATTTTTT TTTTTTACTT 000400
000401 AATTCTCTCT TACTGACCCT GAGAGTGACC ATATTTTTAA CCAATTTGGT CTTCAGCCTC AAAACTTAGC TCTTTCCTTT 000480
000481 TGTGGTCCCC GAATCCTATC ACGTGTCATG GTGGCTGTGA AGATGTTTGC CAAGCCTGCT GAGAAGGCTC ATCTGTGGCA 000560
000561 TCCAAAAGCA GAGATTTCAA CTCTGGACCC CTGTGACCTG CCTTTGTAAT TATGGATACC CAGCACTGTT TTGAAATATC 000640
000641 AGTGGACATC CAGTTTTTAA AAGCCCTCAG AGCTTTGGGA GACACCCCTT TATCTCTCTG GCATGTCAGA GAACCGATTC 000720
000721 AACCCTTCTC ATCTCCTCCT CCTTCCCTCT CTTGGGCCAT CAGGATGCGG CAGCAACTCA CTGTGCATGT TTTTACAGCT 000800
000801 CTTCTCCAGT AATGCTGCCA TTTCCACTGC AGACCACAGG ATAAAAGGAC CGCTTCACCG TGGCCCAGGA TACCCTTTTA 000880
000881 AGTAGGAGAG GGAGAAGAAA GTACTGCTTT GATCTAAAAT TAAGCAAACG TTCTTCAATA AACCCACCAT GAGACTTGAC 000960
000961 CACTAATGGT GACCAGCAGT GGCTTTGTCA TGGCCCTGCC CACTGGGGGC AGGCACATGC CGGGGCCAGG GCAGGCTGCC 001040
001041 AGCTGGAATA AAAACCTGAC CATTAGACCG AGCGTGGTGG CTCACGCCTG TAATCCCAAC ACTTTGGGAG GCCGAGGCAG 001120
001121 GCGGATCACC TGAGGTCAGG AGTTTGAGAC CAGCCTGGCC ACCATGAGCC AGATCAAGGA AAGAGACAGG AAAGCAGATG 001200
001201 ATTTTACCTG CCTTCCCTAA GTGCACTCGG GAAGAGAAGG ATCATCTCAA AAAGGGTTAA GGAATGAGAT CATGGAAATC 001280
001281 ACTTACACAC GCGGTCGCGG CTTGGACTTG GCTAGTGAGG CCGGCCTGCC CACTCTGCTT CCATTCACTC AGACACAGCT 001360
001361 TGGGCTTTTC CTCCAAGTGC TGGTAGCAGT CATTTATGAG GGAGGAAAGG AGCAGAATAA ACACACTTCT CAGC
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Predicted Small Protein

Name ENST00000456327.1_smProtein_611:811
Length 67
Molecular weight 7599.7699
Aromaticity 0.0909090909091
Instability index 46.8984848485
Isoelectric point 6.81109619141
Runs 8
Runs residual 0.0293957539467
Runs probability 0.0469881646353
Amino acid sequence MDTQHCFEISVDIQFLKALRALGDTPLSLWHVREPIQPFSSPPPSLSWAIRMRQQLTVHV
FTALLQ
Secondary structure LLLLLEEEEEEHHHHHHHHHHHLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHHHL
PRMN -
PiMo -