ENST00000563865.1
Revision as of 08:55, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000563865.1 |
Source |
Gencode19 |
Same with |
lnc-NMNAT3-1:1,NONHSAT092385 |
Classification |
intergenic |
Length |
3945 nt |
Genomic location |
chr3-:139397462..139401406 |
Exon number |
1 |
Exons |
139397462..139401406 |
Genome context |
|
Sequence |
000001 AGTTTGGCCT TATTTTCTAG CAAAAACTCA TTGCTTAGCT GCATTTAATA ATCCATGGAA CATTTCTATT AACTTCAGTG 000080
000081 TGTGAATTGT GTGACTGCAG AATGGGTAAA AAAAAAGTGA GAATCAGGAA TACAAAATAT GCAGAAAATG AAAATAAGTG 000160 000161 AGATGTTAAA TATTTGATCA AGGCCTTTAT TTTCAGGTAA CCAGTTGCCA TCTTGGGGTC TCAAATGCCA ACAGAAGCCA 000240 000241 CAGAATACTA TTCTGAATTA TTAAAGTGAC TAGGAGAACC TTGTTTCTTT TTACTACTTT TAAATGAGTA TGTAGCCTCT 000320 000321 CAAGCTAACC TTTGCTTAAA CATTTAACAT AGACATTGGG TGAAATATAA AAAAGCAAAA GTTCTCAGTC TAATACTCAA 000400 000401 CCTGTAATTA TAAATCAGAT TACATAATAC AGCTCAGCCA TTTCATTTTA TTTTTCTGTG TTCTAACAAT TTTTTTCAGT 000480 000481 TTGAGAGGAA CCTAACCAAG ATTAGTTGAA AGTCTGCATT CTAGAATATT TTTATCTGTA TGTGTACTGA ATATATTTTT 000560 000561 CATTTGCTCA ATTCAATGCA TTCATTCATT CAACAGATAT TTATTGAATA TCAGGTGCTA GGCACTGTTG TGGGTGTGAG 000640 000641 GACATATCAG GGAACAAAAT GTATAAAGAT TCAGCCACTC TTGGGCCCTA CACTTCTGCG AGGGAGACAG ATAATGAGCA 000720 000721 AAATATCCTC CAATGATAGG TAGTAAGTAC TACAAAAGGG GTTGTATGGG AGTATTTTTG TTTGTTAAGT GGAGCTGTCT 000800 000801 ACTAGAAAGC TAATGAATTG GGAAAGTTAT CCTAAGAGTG GGCGGTGTGT TATTTAGGTC AATGAGGACA GCAGCACCAT 000880 000881 GGTTCTAGGT GCAAATAGGC CCAGTGTGTC CAAGGAACAG CAACAGAGTC AAGGAAACCA GAGATGAGAA TGGCTGACAG 000960 000961 CTGGAGCACT TGTCAGGGCA GATCCTTGAG GGCCTTGCAC ACCAGGGGGA GGACTTGAGA TTTTACCCTA ATTGTGGTGG 001040 001041 AAGCCACTGG AAACTTTTGA GCAGAGGAGT GTTATAAACT GATTCACGTT TTAAAAGGAT AATTTTAGCT CAATAGTAAG 001120 001121 TATAGCCATG AAGCCAAATT GACAAAGTGA AGGTTTTCTA GTGAGGACCT GCTTTGATGC TTGTATAAGA AAGATCTGGC 001200 001201 ATGAGCACTA TCTGTTCACT GTTTGTAAGA AAACACCTGG CCGGGCACGG TGGCTCATGC CTGTAATCCC AGCACTTTAG 001280 001281 GAGGCCAAGG CGGGTGGATC ACCTGAGGTC AGGACCAGCC TGGCCAACAT GGTGAAACCT TGTCTCTTCT AAAAATACAA 001360 001361 ACATTAGCTG GGCGTGGTGG CGAGCGCTTG TAATCCCAGC TACTTGGGAA GCTGAGGCAG GAAAATCACT TGAACCTGGG 001440 001441 AGGCGGAGGT TGCACGCCAC TGCCCTCCAG CCTGGGCTAC AAAAGTGAAA TTTCATCTCA AAGAAAAGAA AAGAAAATGC 001520 001521 CCATCTGCTG AAGTAGTTGC AGTGACTGAA AAGTTTGCCC TCTTTGGTCA TTTGAAAAGT CCACCAGTCT CCCTTTTACA 001600 001601 TTTTACTTTT ACCCACTCAA AGCTTGCTTT TCCTCAGCGA CAGGTCAGAA GTCAAGGTTA GAATAGGTTC ATCCAAATAC 001680 001681 AGAGGCTGCC CCAGTCTACG GCCTCATCAC AATCCATCCA CAAGCAAGCT TTCCAGAATG GCCTCAGGTC CATCCCAGGA 001760 001761 CTGTGACTCT CAGCCATCTG CACATTGCTT ACTGCCCAAA GAGTTCCTCC TGAAACTTCA TCAGCACACT GTTAAGTGAT 001840 001841 AGAAGGAAAC TGCAGAATAG TGTTATACTG TAGCCAGATC TCATTTTAGT AATGACATTT TTATGCCTAG AAATAATGTT 001920 001921 TTAAATGTTC AAAAATATGA GCTAAGTGGT CAGTTCCAGC TTTTTTCCCT GTAGAGACCT GTCTCCTGCA GCCTTGGGTG 002000 002001 GGATGATTCC AAGGCATGCT CTTCACACAG TTTTCTAGGG TTTTCCCCTA GGATTAAGCC CTAAACATCT ATTATAGTAG 002080 002081 CTGGCTTAAT CTTTTATTGA GCTCCCCTTT TCTTCCCTGT ATTGCTTCTT CATTACTCTG CTGGTGTTCC ATGTACCTCT 002160 002161 CAAATAACTA CTTGCATTAA TTCTTACCTC AGGATCTGGT TCTGAGGCAC TCAAGCTGAG ACATCCTCTA TGTAAAATCT 002240 002241 TCCTCCTTCC TGAGGTGGCA TTAGGTGGCC ACCTTCCTTG AGCCATAATG GCAGATAGGA TCCAGGAGAA ATGAAACTTA 002320 002321 CCAATAAAGG AGAGATCTGA AAATATTATT CCCATTATAC CCATAATCCA GTAGTCTTTT TGTGAGCTTA AGCAAATACA 002400 002401 AGACTTGCAT TTAGGTATTC CTCCTTCTAA AAAATTAGGA GGTAGTTGCC TCTCCAAAAT GGATTTCTCA GCCATTGCGT 002480 002481 CTTCACCGCT TAGGTTAGGT AAAGCTTGGC TATTATATGA GGTTCTTACC TTCCAGCACA AGGGGACGCT ACTTTTTTAA 002560 002561 AAAAATATTT TTATTTCCAT AGGTTATTAG GGAACTGGTG GTATTTGGTT ACATGAGTAA GTTCCTTAGA GGAGATTTGT 002640 002641 AAGATTTTGG TATACCCATC ACCCGAGCAG TATACACTGA ACCCAATTTG TAGTCTTTTA TCTCTCACTC CCTTCCCATT 002720 002721 CTTCCCCTCT GAGTCCCCAA AGTCCACTGT GTCATTCTTA TGTCTTTGCA TCCTCATAGC ATAGCTCCCA CTTATGAGAA 002800 002801 TATACCATGT TTGGTTTTCC ATTCCCGAGT TACTTCACTT AGAATAACAC TCTCCAATCT CATCCAGTTG CTGTGAATGC 002880 002881 CATTAATTCA TTCCTTTTTT CTTGCCTAGG AAACCAGGCT TCCTCCTAGA CCAAGCTTTA GTCTTCACTA CCTCAGGCAG 002960 002961 AGAAAGCTTC CCTTGCATGA GGAAGTCATT GCCCAGCCTC TTCTCTGCTC TCTGTGTGCA GCTTCTCCCT CCCTGGCCTA 003040 003041 GGGCCCTGAC CCAGAATGAC TCTTCAGCCC ACGATTTTAA TCGAAGGCCT CTAATCAACC TGTGGTACTA CATGCTACAC 003120 003121 AAGATTCTCA GAAATCCCTA AGCTTTCTCA TGAGCCTCCC ACCCTGCTGG GAAATAAGCT GACTTATCAA TTAAAGAATA 003200 003201 TCCAAAGATG TTAAGCCACT TAATCCTCCC CAAAACTCAG TGCGGTAGGG GTTGTTACCT CCCATTATAC GAAAGGAAAG 003280 003281 TGAGGCTTGG GAAGTAAAGA GACTTGTCCA AGATCACCTT CTGGAGCCAC ATTTTACACC ACAGGTAAGA GAAAAGGGAT 003360 003361 CCGAGAGGGC ACGGACACTG TGTCTTCAGA CTGAGTGGGG AAGTACCATT TACCTGGGTA CTTATTGGGT GCAAGTTGCA 003440 003441 TGCCCCCGGT GCTAATACAC AAGGGACAAA TTTATGGGCC TCCTAAAACT GTGGACAGTG CACCCGTCCA GCCAACTTCA 003520 003521 TGGGTGCACC GTGAGGCTCT GGTGATGTGG ACAGGCTTAT AAAACACTCT CCATACTAAG ATGAGGTTGT GTTCCTGTGT 003600 003601 CTAGGAAACG CTGGAAATTA AGTGTACAGC AATCAAAAAA CCTTGACATC ATCCTTGATG TCTCTCTTTT TCGCACACTC 003680 003681 CAATTCACTC CATTAGGAAA CTGTATTGGC AGAATCTAGT GAATCTTGTC CTTCAAGGCC TCTCTCTGCA AGGCTCCCAT 003760 003761 GAGCCCTGGG GGCTTATGGA GAGTTCTGGG TGGGCAGAGG AAGCCAGACT GCGTTAGGGA AGCAAATTTG GGACCTAAAT 003840 003841 TTCCTAAGAA GGTTTTAGGG GATAGGGACC CCAATCTCTA AGACCCCAGG ATTCTGTTAA GATTTATTTT CTCATTCCAA 003920 003921 ATAAATGTTC ACTGGCAAGC CCTAA |
Predicted Small Protein
Name | ENST00000563865.1_smProtein_539:742 |
Length | 68 |
Molecular weight | 7717.0451 |
Aromaticity | 0.089552238806 |
Instability index | 42.5089552239 |
Isoelectric point | 9.50885009766 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.0472266384032 |
Amino acid sequence | MCTEYIFHLLNSMHSFIQQIFIEYQVLGTVVGVRTYQGTKCIKIQPLLGPTLLRGRQIMS KISSNDR |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHEEEEEELEEEEEEEELLLEEEEEELLLLLLLLLLLEEEE EELLLLL |
PRMN | - |
PiMo | - |