ENST00000400540.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000400540.1

Source

Gencode19

Same with

NONHSAT032757

Classification

intergenic

Length

1031 nt

Genomic location

chr13+:30510042..30524625

Exon number

6

Exons

30510042..30510361,30510653..30510838,30511339..30511418,30512043..30512146,30521740..30521908,30524454..30524625

Genome context

Sequence
000001 ATAGAGGTGT TTGGGGTGTC AGCTCTGAAA TGCTAAAAAT AAAACCAGGC TTTCTATCCT GGGATGTCTC ATTAGTTTGC 000080
000081 TTACAAATGA GTCCCCCTGC AGTTTTTCAG CAATTGGCTA ACAAGCTCTA ATTTGAGCGT TTGGGCTGGA CCTTGGCTCA 000160
000161 GTGGGAGCAG ACGCGGAGCA GACGCCTTCT CGGAGCTGCC TGTTTGGGGA AGCTGGTCGT TTCCACTCTA GCTCAGCCTC 000240
000241 CCAGAACAGG GAAGCTGCAG GAAAGTTGAC AAAAGCACAG CAAAGCAGGG AGAGCCTCCT CGGTAGAGAG CAACGACCAG 000320
000321 TCCTTCTAGG TCATGTGGAG TGGGCCAGCT TTAATGAACC TGTCTAAAAG GAAGGAAGAG AAAGAGCTCA GCTCCTTAGG 000400
000401 GGAACAAGGT GGACCTTGGC AGCTGTCTCA CTCCTCACCA GCTCTTCACC TCAGATCTTG TCCTGACTTC CTGGTCCACT 000480
000481 AACGGCCTCC TGGATAGAAG AGTCAGTTCA CCAGCCCAGG AGATGTTCTG AAAATTGACA ATGATCATGA TATACCCTGG 000560
000561 ATCCAGAATA CTTCTCTATA CAATGGGCAG AGAACAAAGA TTGGTGGCTT CCTCCTGAGC ACACTGGGAT GTGGCATTAC 000640
000641 ATCGGGGCTG CTGAGTGCCC TTACCTTCAG CTGCCCAGAT GCAGAGGCAG TTCCACAAGG TACTGGCACA AGAAGAGTCG 000720
000721 TGGAAGACTG ACCTGGCCAT GGCTTCTCAT GTCCCAGCTC AGGACCTGCC ACATCAATTC TCCCTTTCCT CTGGCCGTCA 000800
000801 CGTGTGGAGT GAAATTCTCA GAAGCGGCTG TCCCTGTGCA CCTCTCTGGC TGTGTCCAGA AAATGAACAT CTGTTTACAG 000880
000881 CTTCAATTTT CTAATGATTA GAATGCCACA AACAAGAAAA CCCAGAGGAA AGCTGTTGAT GCTGAAATGT TTCCTTCCTC 000960
000961 TACATATTCC ATGATGCGTC CTGTGGGGTT ATGCAAACAG TAATATCTCA TTAAATATTC TGGTCTCTTG G
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Predicted Small Protein

Name ENST00000400540.1_smProtein_332:481
Length 50
Molecular weight 5473.1864
Aromaticity 0.0612244897959
Instability index 72.5183673469
Isoelectric point 6.81402587891
Runs 7
Runs residual 0.019194704909
Runs probability 0.0428243369419
Amino acid sequence MWSGPALMNLSKRKEEKELSSLGEQGGPWQLSHSSPALHLRSCPDFLVH
Secondary structure LLLLHHHLLLLLLHHHHHHHHHLLLLLLEELLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -