ENST00000400540.1
Revision as of 11:00, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000400540.1 |
Source |
Gencode19 |
Same with |
NONHSAT032757 |
Classification |
intergenic |
Length |
1031 nt |
Genomic location |
chr13+:30510042..30524625 |
Exon number |
6 |
Exons |
30510042..30510361,30510653..30510838,30511339..30511418,30512043..30512146,30521740..30521908,30524454..30524625 |
Genome context |
|
Sequence |
000001 ATAGAGGTGT TTGGGGTGTC AGCTCTGAAA TGCTAAAAAT AAAACCAGGC TTTCTATCCT GGGATGTCTC ATTAGTTTGC 000080
000081 TTACAAATGA GTCCCCCTGC AGTTTTTCAG CAATTGGCTA ACAAGCTCTA ATTTGAGCGT TTGGGCTGGA CCTTGGCTCA 000160 000161 GTGGGAGCAG ACGCGGAGCA GACGCCTTCT CGGAGCTGCC TGTTTGGGGA AGCTGGTCGT TTCCACTCTA GCTCAGCCTC 000240 000241 CCAGAACAGG GAAGCTGCAG GAAAGTTGAC AAAAGCACAG CAAAGCAGGG AGAGCCTCCT CGGTAGAGAG CAACGACCAG 000320 000321 TCCTTCTAGG TCATGTGGAG TGGGCCAGCT TTAATGAACC TGTCTAAAAG GAAGGAAGAG AAAGAGCTCA GCTCCTTAGG 000400 000401 GGAACAAGGT GGACCTTGGC AGCTGTCTCA CTCCTCACCA GCTCTTCACC TCAGATCTTG TCCTGACTTC CTGGTCCACT 000480 000481 AACGGCCTCC TGGATAGAAG AGTCAGTTCA CCAGCCCAGG AGATGTTCTG AAAATTGACA ATGATCATGA TATACCCTGG 000560 000561 ATCCAGAATA CTTCTCTATA CAATGGGCAG AGAACAAAGA TTGGTGGCTT CCTCCTGAGC ACACTGGGAT GTGGCATTAC 000640 000641 ATCGGGGCTG CTGAGTGCCC TTACCTTCAG CTGCCCAGAT GCAGAGGCAG TTCCACAAGG TACTGGCACA AGAAGAGTCG 000720 000721 TGGAAGACTG ACCTGGCCAT GGCTTCTCAT GTCCCAGCTC AGGACCTGCC ACATCAATTC TCCCTTTCCT CTGGCCGTCA 000800 000801 CGTGTGGAGT GAAATTCTCA GAAGCGGCTG TCCCTGTGCA CCTCTCTGGC TGTGTCCAGA AAATGAACAT CTGTTTACAG 000880 000881 CTTCAATTTT CTAATGATTA GAATGCCACA AACAAGAAAA CCCAGAGGAA AGCTGTTGAT GCTGAAATGT TTCCTTCCTC 000960 000961 TACATATTCC ATGATGCGTC CTGTGGGGTT ATGCAAACAG TAATATCTCA TTAAATATTC TGGTCTCTTG G |
Predicted Small Protein
Name | ENST00000400540.1_smProtein_332:481 |
Length | 50 |
Molecular weight | 5473.1864 |
Aromaticity | 0.0612244897959 |
Instability index | 72.5183673469 |
Isoelectric point | 6.81402587891 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0428243369419 |
Amino acid sequence | MWSGPALMNLSKRKEEKELSSLGEQGGPWQLSHSSPALHLRSCPDFLVH |
Secondary structure | LLLLHHHLLLLLLHHHHHHHHHLLLLLLEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |