Lnc-CCDC54-2:12

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	lnc-CCDC54-2:12
Source	LNCipedia2.1
Same with	NONHSAT091035
Classification	intergenic
Length	6753 nt
Genomic location	chr3+:106961082..107004322
Exon number	2
Exons	106961082..106967678,107004167..107004322
Genome context
Sequence	000001 AGATTTATTG AGATATAATT CACACACCAT ACAGTTCATC TACTTAAAGT GTGCAATTCA ATGTGTACAA TTCATTGCTT 000080 000081 TCAGCATATT CGCAGATATG TGCAACCATC ACCACAGTCA ATTTTAGAAA ATTTTCATCA CCTGGAAACT TCATACCCTT 000160 000161 TAACTATCAC TCCCGCAACC CCACTTCCCT ATCCTTTCTA GCCCCAAGCA ACCACTAATT TTTCTGCTCT ATAGATTTCC 000240 000241 CTATTCTGGA CATCTCACAA AAATTGAACC ATATGATATG AGGTCTTTTG TGACTGGTCC CTTATGCTGA TACTGGACAT 000320 000321 TCGAGTTCTT TCCAGGTTTG GAGCTATTAC AGATAATACT TCCGTGAACG TTATTCTGTG AATCGGTTCA CATAGATACA 000400 000401 CATTTCTATT GCGATACATA TCTAAGGTAT GCTCATAACC AGCTATAATT ACAGTGCCAA GCAGTTTTTC AAATTTATAG 000480 000481 ACCTGCCAGC ATTGTATGAT GAGAGTTCTC ATTGTTCCAC GTCCTCTCCA ACATTTAGGG TTTATGTGGT TTTAATTTAC 000560 000561 ATTTCTCGGA TGACTAAAGA TAAAGAGCAT CTTTCATGTG ATTATTGGCC ACTCGGATAT CCTCTTTAGT TAAGTGCCTT 000640 000641 TTAGGCATTC ACCCACTTTT CTATTGGCTA ATCTTCTTCT ACTTGATGTG TATATTCTAG ATAAGTGCTG CAAACAAACA 000720 000721 CCTTTTCCTA ATTAAACGCT TGCATTTTAA CTTCCCATTT TTAGATTTTG ATAAAGGTAA ATCTTTTATT TTTATTGAGG 000800 000801 TCTAATTTAT CACTCTTTGT TCATGGTTAG TGCTTTCGCT AACCTGTCAG AAATCATTGT CTACCCCAAG GTGACAAGGG 000880 000881 CATTCTCTTA TGTTACCATC TGGAACCTTA AGTTTTTTCT TGGAACACTT AGATGTGCTA ACTACCTAAA ATTAATTTTG 000960 000961 GCATATGGTG TGAAGTGAGG ACTAGTTTTT TTTTTTTTTT TTTTTTTTTT TTTTAATGTA GCTATCCAAC TGACCTAAGT 001040 001041 TTTTTTTGGA AAAGAAAGTC CTTTCCCCAC TGCTCTGCAA CATCACCTTT GTCATAAATC AATAGAAATA GACCTACAGA 001120 001121 TGTTGGAATC AGTAGAAAAG GAATTTTAAA GATATTTATG GCTATTTTAA ATTATTAAAG ATTCTTACTA AGGGTAGATA 001200 001201 TGATAAATGA AGACAGGGAA TTTCAAGAGA AATACAACTA ATAGAAGAAG AACAAAATGG AACCCCTAGA ACTGAAAATT 001280 001281 ATAATAACTG AAATTATTTG ATGGGATTAT CAGTAGATTG GACAACAGTA AGGAGAATCA GGAAGCTTAA AGATAGGTCA 001360 001361 ATAGAGGGCC AGGTACAGTG GCTCACACCT GTAGTCCCAG CCTACTTTGG GAAGCCTAGG CGAACGAATC ATTTGAGGTC 001440 001441 AGAGGTCAGA AATTTGAGAC CAGCCAGGCC AACATGGTGA AACCCCATCT CTACTAAAAA TACAAAAATT AGTTGAGTGT 001520 001521 GGTGGTGCAC ACCTATAATC CCATCTACTC GGGAGGCTGA GGCTGGAAAA TTGCTTGAAC TAGGGAGATG GAGACTGCAG 001600 001601 TGAGCTGAGA TTGTACCATT GCACTCCACC TGGGCTACAG AGTGAGACTC CATCTCAAAA AAAAAGATAG ATCAATAGAA 001680 001681 ATCATCCAAA TTTAAAGTGC ACTGAGAAAA AAAAAAGTTT ATAATAAACA GAACATCAGT GACCCATGAA ATAATGTCAA 001760 001761 GACATCTAAC TTACATGAAA TTGGACTTTT AGAAGTCAAA GAGAGAAACT ATCAGGCAGA AAAATACTTG AAAAAGTATT 001840 001841 AGCAAAGGTT CCCCAAATAT GATCAAATAT ATTTATCCAG AATGTTTACT TGTTTAATGA AGAGTTGATC CCATAACCTA 001920 001921 TTTTGCCATT AGTGGAGTTT AGAAGTTAGC ATAAAAGGTT ATAAAGTGTT ACATCTCCAT GAATGAGCAG CAGGGCATTT 002000 002001 AAAAGTCACA TTGATTGTAG AAAAAATACT TTGCTGGGTG GAAGGGTCCT GAGCATGGCT ATTCTTTTAA CATAAATGTT 002080 002081 GCCTGCCCAC TAACATTACC ACCACCCCAA TCATAGTAAT GCCAAAATTC CTCACAGTTT TTCAAAATAT CCCATTGGTG 002160 002161 CACAGTACGG CCCTGCATCC ACTGAGAACC CTTCTCTCCT GTGATCTGCC ACTGCCTCGC TGTTCCAACC TTTCTAACCT 002240 002241 CATCTTCTAA TGCTCTATGT ATCAAACCTC CCTGGCCTCC TTCCAGATCA GGGCTTTGGG GATTGCTTTT TCCTCTTCCA 002320 002321 GAATGCTCCT GCCCCCAAAT ATTTATATAA CTGACTCTTC CACAGGTCTT TGTTCTGATG TCATTTTTCT CAGTGAGACC 002400 002401 TACCAATGAA ACAAACCAAA CAAAAAACTT GTACATTCTC TCAGCATCTG GATTAGTTTG CAGGGCTGCC ATGGCAGAGC 002480 002481 ACCGCAGACC CAGTGGCTTA ACCCTCAGAA AATTATTTTC TTAGCTCTGG AGACTAGAAG TCCAAGATCA AGATGGCAGC 002560 002561 AGGTTTGATT TCTCCTGTGG CCTCTCTCCT TGGCCAGCCA TTGTCCACTT TCTGTGTCCT CTCATGGTTT GTCCTCTGTG 002640 002641 GGTGAGTGCC CCTGGTGTCT CTCTGCATGC CCAAATTTTC TCTTATAAAG ACAGCATTTA GATTGGATTA GGGCCCATCC 002720 002721 AAAGGGCCTC ATTTTAACTT AATTGCCTCC TTAAAAACCA TTTCTACAAA TATAGTTACC TTATGAGGTA CTAGGGGTTA 002800 002801 GGCCTTCAAC ATATGAATTT TGGGGGTATA TAATTCAGGC CATACACCAT CTCTTGTTTA TTTTCATCTG TCGCCCCTCC 002880 002881 CCCCCACCTT TTTTTTTTTT TAGATGGAGT CTCACTCTCT CGCCCAGACT GGAGTGCAGT GAAGCAATCT CAGCTCACTG 002960 002961 CAACCTCCAC CCTCCCGGGT TCAAGTAATT CTCCTGCTTC AGCCTCCTGA GTAGCTAGGA TTACAGGCAT GCACCATCAT 003040 003041 ACCTGGCTGT AGCCCTTATT TTAAATTCAA TGTACTGTAA TGATTTACTT GGTTTATTGT CTTAACTTTC TGTTCCACTG 003120 003121 GAATACAGGT TCAATAAGGA GGGATTTTAA TCAATTTTGT TCTCTGAAGT GTCTTCAGAA CCAAATGAGT AAAAAATTAT 003200 003201 CATTGTTGAC GTTTTCACTT CGTGCTAGCA TATGGGCAAT CTCAATTTAT TTCTAATAAC TCCCTGTATC TTTCAGAGCA 003280 003281 TTCCTTCATG AATGAAGAAA GCCCTGATAG TGTTCCAGTA ATTTATGTTT TTTATGTTTG AATTTCTTAA CAAAAAGAAT 003360 003361 TATACCACTA AAAGATCCAG CTTTTTTGTT TGTTTTACTT TTTGAAAAAA AATTTATATT GTTAATAGAG ACAGGGTCTC 003440 003441 ACCATGTTGC CCAGGCTGGT CTCGAACTCC CGGACTCAAG TGATCCACCC TCCACAGCCT CCCAAAGTGC TGGGAGTACA 003520 003521 GGTGTGAGCC ACTACACCCA GCCAAGATCC AGCTTTTTTA CCAGGGAAAA TAAGAAATTT AATATGCTTG TTTCCAAAGC 003600 003601 AACAAAAGCT TTACATGATT AAGTAGACTG AGGGCTCTTC CATATTAGAC GAAAATATCC AGCCAAATTG CTGAGGACTC 003680 003681 CCTCAGACAG GAAAAAAAAT GTTTAGAGCC ATCCTCACAA AGAAATTTTC CTGTTTAATT ATAACCTAAT TATGACAACT 003760 003761 TTTTTTTCTT TAGGTGGTCA GGCTCAGGAT GGACCATGAG CTTTCAAAAA GGAAAAAGGT GGAAATCCTC AACTATGCTG 003840 003841 CCATCTGAAT AAGTGTTTCT TTGTAGATGC ACAGAGTCAA GGAAAATTAC ATCCCTGCAT TATGTAATGT ACCAACAACG 003920 003921 CACTTACCCA CTGTTTTAAT CTAGGTTATT CTTGAAAGCA GAGCCTGAGA CAAAGGTAGA CACATTCTAT TTATGAGTCT 004000 004001 AACACCCAGG AGCAGGAATG AGAGATAGGG GAGTGAACTG GGGAAAAGGG AAACTAAGTC CGAGCAAAAC CAGATACTGC 004080 004081 TCTTATCAAG TGGTCCACCC CTATTAATGG CTACATAATG CAGAACTTTC TCAGGATTCT TCTTAAACTT TATCTCAGAA 004160 004161 CTGTCTGCCT CAGGGAGAAA GGAGAAGTAT TTCTCCATCA GCAGCCACCT CCTGTGTGTT GAGGGCTGCT CCTTTGGGGC 004240 004241 ATTAACCCAC TGCCTCCACC ACCCCAACCC TCTGGGCTGC AAAGAGCTAG CTGACAGTCC AGCTGGTACC TTAGCATCAC 004320 004321 ACATTGCTGC ATCAGAGAGG TCTTAAGACA GGAAGCTAGA GTCTTGGTGC ATGCTCGAAG TGAGACGGTG TCAGCACAGA 004400 004401 GCAGGGTAAA ATCTTCCCGT TAACTCTTCA CCAGAGCTAT GACTGGAATC AGAGGTTGAA AAGATGTGAG ACTGTACCCA 004480 004481 AGAAGCATCT TATAAGCCTA CGTAATATAC TGTTAGACTC ATCGAAATCT ATTTCCTCCC TTCTTTATAA TCAAAACTTC 004560 004561 AGTGTCCAGA ATAAAGTTGG CAGAAGGGTT AAATTGGAAA GTTAAATGTA CTAGAAGGTG TACATTTATA AGTTTTGACC 004640 004641 TTGAGTCGTG TTCAAGGAGA AAGTGACATT GGAACTTGGA AAATTTAAAA ATGATTCTAC TTGAAAAATT TGACCATTGC 004720 004721 ATAGAAATAT TAGCTATCGT CTAATCTTTT GTAATCTTAG AAACAATCGT GAATTGTTTG GTGAAAAATG AAAAAATAAC 004800 004801 CATTTCTTAT GTCTCCGTGA CCTTTATAGA CCAATGTCAC CAACTTTTCC TAAGGTAATT GTTTCCTACT GTCAAATAGC 004880 004881 TCTAGTGATA TAAATCTTAA CAATCAATGA AGGGAAAACT GGTGGAAACA TAGGAGGAAA AATACTGGGA TAATTTTCAT 004960 004961 CACAAAGTAT TGGCATTAAC ATTGGTTAGA ATAGGGGAGA AACTGCATGA CTTGACAACT GGACATTCCT GTATGTTGTA 005040 005041 TGAGGCCCTG TCTTAACAGA AATAGTGATG TCATCATCAT CCTCTCTTAT TTGGTCTTGA ATTGCCACCA ATCGGATAAA 005120 005121 ACCTTTGAAT TATTTAACTC AATATATGTT AAGTTTCTAC TATGTGCTGT GTATTGGTAC TATAAATATG AATAAGACAT 005200 005201 AAGATATTAC ATTCAAAAAC ATCAGAATAC ATGTTCTTTT AAAGTATACC CCAAAACATT TACCATGTGT TCTGGGGCGC 005280 005281 ATGTTAGGCT GGATCACAAA TCAAGTCTCA AGAAT