NONHSAT000991
Revision as of 15:04, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000991 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2948 nt |
Genomic location |
chr1+:14521688..14524815 |
Exon number |
2 |
Exons |
14521688..14523961,14524142..14524815 |
Genome context |
|
Sequence |
000001 TTCACTGATA AGGCTGTTCC TTCTTCAAGG CTGTTCCTTC TTCAGCAATA TGGACAGGTT TACTCTTCCA GAGCCCAGGA 000080
000081 ATTGGCACTA TTTTGTCACT TGTCCCTCCA CCCTCCCTTC TTTATCTTCT AGGACCTCCG ATACCTCCTC TTCATTCTGC 000160 000161 GTTGCTGATA GCTTTTTCTC TATGTCCAAG TGTTTATTAG GATTGAGTCC CAGAAGCCCA GAGAGAATAT GGTAGAGGGG 000240 000241 TGTGTGAGCT TGTCCAGAGT GGGCCACCTA AACAAAACCA GAAAATCATC CATCAGGGAT TCCAATTACA AAAACGGCTc 000320 000321 acacacacac acacacacac acacacacac aATCACTAAA CATTTGGAAA CTACTGACAA AATGAGGCAG AAATGACAAA 000400 000401 ATTACAGACT CAATAAACTG GAAAACTTAC ATCTGAGAAA ATAGTTAGCA GATAAATTGG AACAGGAttt ttaaataagt 000480 000481 ataattaata tcctcggaga aataagaaaa tgttgcatct gaaaaatcag aacaCAGGCC CTTCATTCAT TCatttgtta 000560 000561 attctgcccc tactgattga gttcctgctg tatgctaggc atagttaagg cactaggaaa tcgaaagtaa gtgaggcaaa 000640 000641 atcccagtct tcctggagct taaagcctag gcgggagaga taaaaacata actagtaaaa caaataaatt tatgtgtcag 000720 000721 gcgatgtatt gtagaaggaa ataaggtaga gtcagaggtt taagaggtgt aggaattgaa gtaggggcat ccaatatatg 000800 000801 tagggtggtc caaaaaggcc ttaaaaaact aagagagtgg ataaaccaag tggatgtcaa gggagagacc atttcagaga 000880 000881 caaggaacag caggtgtcaa ggccctgagt caggaggatg tctcaacttt ttgaggaaca accaagagac aacggtggtt 000960 000961 ggaggagggt gagcaagggt gagagttcca gagaataaat cagagtagaa gacagggcaa ggtaagccat ttatggcttt 001040 001041 gaaggagtct ggcttttatg ctgaacaaaa gggggagcct atgggggatt tcaaacaaag gaatgatata attggattaa 001120 001121 atattccaaa agagtaacct gtacaatagg gcctaaggaa tggaaactag gtgacctatt aggagacagt aacccagata 001200 001201 tgaaataatg ttacttggac cattacctct ccaaggtggt gagaaatgga caacttctgg aattcctttt agatgatgcc 001280 001281 aagaaatttt gttgatatat aggatgggag gtgagagaga aagagaggag tcaagggcaa ccctgaggat tttggcttgg 001360 001361 gcatctggaa gaatcgagaa ggctggaggg aagggaaggc gagtgagaag atcaagggga ggtgattaaa ggcagaatca 001440 001441 agagtttggg ttgggacata tgtttaagat gctgggagac ctccaagtag agctattcag tgagaagcct ggggttcagg 001520 001521 gaaagaatca gattggaaat acaaagttat gtgatggggt aagttcctct agggagttag tgtaaatgag gagaggagaa 001600 001601 gtcccaggac tgagccctgg gaaagactag tttccaaaag ctgggaaggc gaggaagaac cagcacaaag actgagatgg 001680 001681 agcagccagt gaaagtgaag gaggcttcaa agagagtgct gccaccatag caagctgaag aaagcatatt aagaagctga 001760 001761 aaatgatcct ttgtgagcaa ttctgctgat agatgggccg gaatgaggat gttcattgat cactggaggc agcaatgtgg 001840 001841 aggacattgg tccctgtgat aagggaaaat taggtggatt ctgggggcgt gagcccagct ggaatgagtt caggaaagaa 001920 001921 tggggagggg ggtagagatg acttgttagt gttttaccaa ggggcagatc atgggtccag tagttagaga agaatataga 002000 002001 gttaagagaa acggggattt ttttgttttg tttttaaaca gagcatatca tgtgttgttg agaatgagag aaagattgtt 002080 002081 gatgcaggag ataagacagt gcctgccata atgctcttgc acaggttgtc aaggtggaag gaatttGAGA AAGAACCAAT 002160 002161 TAGAGATCTT TTAAATTaaa aaaaaagtaa atgttaaaaa aaaaaaaaaa aaaaggccag tcaaggtggt acatgcctgt 002240 002241 aatcccagca ctttgggagg tgaatcaggt ggatcactac acttcagcct gtgtgacaca gcaagactcc atctcaaaca 002320 002321 aaacaataac aacaacaaaa aagaaAAACC ACCACTACCA GAACCTTATT TTCTAAGTAG ACTAGAAGAA TGAACAAATA 002400 002401 CGAAGAGTGA GCAGGAAGGT CAGGCTGATA GATTCCCCCA GAAAAAGCAT ACAGGAATAA ACATGAGCGT TCTAAAAAAC 002480 002481 AAGTTGatat gtggagttga ggagccagga gaagcaggag aaaaataggg agaatgaagg ggatgacatt tgtggtcata 002560 002561 atggctggag tgtttgtaga gctgaataaa gacatgtgtc ctcagattga acaggaccac cgggttccac tcagggttga 002640 002641 aaaatcatag taacagagta gtagtagtag ttgttgtagt cgtagtaaaa acttacacat tgaaatatca cagtggcatt 002720 002721 tcgagttctc aagcataaag acaaaaattg aaaagctgcc agagaCAGGC TGTTATGAGT TAGGTCACAA AGGGGCTCTG 002800 002801 AGATCAAGGA AAGAATTTTA TTCCAAGAGC AATAGAAGCC ACTAGAGGAT CCTAAGAAGG GAGAAGGATG GTGATAAAAA 002880 002881 TCTGACTTTT TACAGATGTT TTAGGTTACT GAGGGAGAGT AGATGATGGC AAAAAGACTT GATGGggt |
Predicted Small Protein
Name | NONHSAT000991_smProtein_1970:2110 |
Length | 47 |
Molecular weight | 5693.7449 |
Aromaticity | 0.108695652174 |
Instability index | 44.5043478261 |
Isoelectric point | 10.2470092773 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.0358888300065 |
Amino acid sequence | MGPVVREEYRVKRNGDFFVLFLNRAYHVLLRMRERLLMQEIRQCLP |
Secondary structure | LLLLLLLLEEEELLLLEEEEEHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |