NONHSAT003998
Revision as of 15:15, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003998 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2137 nt |
Genomic location |
chr1+:76252386..76260488 |
Exon number |
10 |
Exons |
76252386..76253289,76254844..76255041,76255637..76255742,76255837..76255959,76256131..76256202,76256970..76257022,76257146..76257256,76257866..76257991,76259769..76259918,76260195..76260488 |
Genome context |
|
Sequence |
000001 GACTGCAGTG TACTCTCAAT GAGGAAGATA TAGATACGAA AAGAACTAGA GCCGCATCAC ATGGGGACTT CTGCAAATAC 000080
000081 AGAGACTCGG ATTAAAGGTG GAGAAGATGG AGCTAAAGGA ACTGCTTATT TAATACATTT GAACAACTTT TGGGGTACTT 000160 000161 AGAAGGTGCT TTGAAACCTG CATTTGATTA AGCAAGAATT CGCTTGCAAG TTAAGGGTTA Gattttttta ttttttaaaa 000240 000241 atatGCTTTC TGCCACATGT AAACCGTAAG TTGTCCTGAA ATGATAAGCT TTGATATTCT ATGGTGTTTA TTTTTTACTT 000320 000321 ATCTTTTTGA ATGAAAAGTG AACAACAAGA AATGCTGGTG GTAATTTTTT GGGTCAATGA TGAGTTGGCA TGTATTCTGA 000400 000401 ATCTAAAGTT GATTATTACT ACTTTAGCTC TAGAATTACT CTGAGACCTG AAAATTACCT GAATCGTGAC TAAGACGAAG 000480 000481 CCTGAATGAT TTAAGTTCTT TTTTGTTGGA TACAATttgt tgttgttgtt gttgttTTGG ttttgttttt gagtcggtct 000560 000561 ccggtcgccc aggatggagt gcagtgacac aacctcagtt cactgcagcc ttaatttccc tggctcaagc gatcttctac 000640 000641 ctcagcctcc ctagtTAGTT ACAATTTTTA AATGGAACGT TTTCCTATTA CAAGATGAAA TCAAGTGAAA ATTGAGATGT 000720 000721 ATGTTGAATC TATGCTGTGG GGCAGAAGAA CGTTGTAGAG GTAAACATTG ATGAGATTAC CACTTTATTT TGAAAGGGCA 000800 000801 CTCCACAGAA GGATGTTATT ATCAAGTCAG ATGCACCGGA CACTTTGTTA TTGGAGAAAC ATGCAGATTA TATCGCATCC 000880 000881 TATGGCTCAA AGAAAGATGA TTATGAATAC TGTATGTCTG AGTATTTGAG AATGAGTGGC ATCTATTGGG GTCTGACAGT 000960 000961 AATGGATCTC ATGGGACAAC TTCATCGCAT GAATAGAGAA GAGATTCTGG CATTTATTAA GTCTTGCCAA CATGAATGTG 001040 001041 GTGGAATAAG TGCTAGTATC GGACATGATC CTCATCTTTT ATACACTCTT AGTGCTGTCC AGATTCTTAC GCTGTATGAC 001120 001121 AGTATTAATG TTATTGACGT AAATAAAGTT GTGGAATATG TTAAAGGTCT ACAGAAAGAA GATGGTTCTT TTGCTGGAGA 001200 001201 TATTTGGGGT CCCACTAAGC AGCTGGTCTA ACTGGAGTTA ATGGTCTGCT GGAACTTCCA GCATGCACTG TGGTAGTTAT 001280 001281 ATCAGCATAT ACAGGAGCAC TGGAACAGAG GGGGCCAGTC TAAAAGATAA GGGATGAACA CAGTGCAGGC CAGAGAGACC 001360 001361 AGCTGCTTCA TGGGATGTGA AAAATCTACT TTTATAAAGT AGGGAGAAAT TGACACAAGA TTCTCTTTTT GTGCGGTGGC 001440 001441 AACTTTGGCT TTGTTGGGGA AGCTTGATGC TATTAATGTG GAAAAGGCAA TCGAATTTGT TTTATCCTGT ATGAACTTTG 001520 001521 ACGGTGGATT TGGTTGCAGA CCAGGTTCTG AATCCCATGC TGGGCAGATC TATTGTTGCA CAGGATTTCT GGCAATTACA 001600 001601 AGTCAGTTGC ATCAAGTAAA TTCTGATTTA CTTGGCTGGT GGCTTTGTGA ACGACAATTA CCCTCAGGCG GGCTCAATGG 001680 001681 AAGGCCGGAG AAGTTACCAG ATGTATGCTA CTCATGGTGG GTCCTGGCTT CCCTAAAGAT AATTGGAAGA CTTCATTGGA 001760 001761 TTGATAGAGA GAAACTGCGT AATTTCATTT TAGCATGTCA AGATGAAGAA ACGGGGGGAT TTGCAGACAG GCCAGGAGAT 001840 001841 ATGGTGGATC CTTTTCATAC CTTATTTGGA ATTGCTGGAT TGTCACTTTT GGGAGAAGAA CAGATTAAAC CTGTTAATCC 001920 001921 TGTCTTTTGC ATGCCTGAAG AAGTGCTTCA GAGAGTGAAT GTTCAGCCTG AGCTAGTGAG CTAGATTCAT TGAATTGAAA 002000 002001 GTTGCATAGT ATAGTTTTGC CATTTTAACA TTTCTGTATT TGAAGTGCTT ATCGAATCTA AAAGTGACTA CTGTTAATAT 002080 002081 TTTGTATATT GTGttaaatt aattttaata aattatataa ttatacatat tgtaaaa |
Predicted Small Protein
Name | NONHSAT003998_smProtein_770:928 |
Length | 53 |
Molecular weight | 6407.7679 |
Aromaticity | 0.0769230769231 |
Instability index | 49.1384615385 |
Isoelectric point | 11.295715332 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.00731613966908 |
Amino acid sequence | MRLPLYFERALHRRMLLSSQMHRTLCYWRNMQIISHPMAQRKMIMNTVCLSI |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHEELLHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |