NONHSAT004378
Revision as of 15:17, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004378 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1386 nt |
Genomic location |
chr1-:90224796..90229337 |
Exon number |
2 |
Exons |
90224796..90225051,90228208..90229337 |
Genome context |
|
Sequence |
000001 TCTAGCACTA AAGCTAGAAG GGAAGCTTGA GGCCACATTG TGGAGTGCCA AGAGGTTTGA ACTTTTGCCT GGTTTGAACT 000080
000081 TTTACCTTCT TAATCTTTTC CCCGCATCCC CACATTTGAG GACAGGACAC CTCCAGGAAC TGCAGCTCAG CAACAGGGGT 000160 000161 TCAGCGTGAG CGCGGCCTGG GGAGGGTCAT CGCCTTTTTG GGGAGTGTGG GGAGAAACGC GGCTCGCCTT GTCGTGGCTG 000240 000241 GCGATACGCC TCTGCAGGAA GGGTGTGTCT CCCCGCTTGA GGATTCTCCC TATAGATAAA GAGGAGACTC AGCAGAGCCT 000320 000321 TAATTAGAGA TCACAGAGGA CTGACAACGA GCGTCCGGAA GACGAATTGG CAGCGAGGTG CATGGATTCG ATACAGAAGC 000400 000401 TGGAGATAGA GTCCAGCTAA CAGACCACTG CAGTTCGACG GAGCCAGAGT GAGGCAACGA GGAGAGATGT CGGGGAAGGA 000480 000481 AAGGGGATGG GACTTGGGGA CTGGAGCGGC TCGAGAGCGA CGGAGAAGGG GGCGTTAGGC TCTAAGGATT CTCTTACTGT 000560 000561 GCCTCCTCCC CGTGTCCTCG GGTGGCGGCT GCGCAGCCCT CCAGCCCTCA GAGCTGCCCT GCAGCACCTT GGCCACTAGG 000640 000641 AGGCAGGCCC GCCTTATCTG GAGCCCCGGC CGCCGCTCAC TCCAGGGAGG GCTGCGCTGC TGCTTAAATT CCAAGTCAGG 000720 000721 CCAGCCCCTG GAACGCTTAA TGGGAGCTTA GATTTAGAAC AGTTGATTTT CATTGAGACG GAAATTTGGA CAGTCTCCCA 000800 000801 CTTGATTGAA AACGGCTAGA AACAAGGCTT ACGGTAGAGC AATGAATGCC AGAGTGCAGG CGCCGGTGCC CAGGCGGCCC 000880 000881 GGGGAACAGG AGGGCCGGAG GAGGAAACAG CTGCCTGCAA AACACCAGCA GCGCCCTTAA TTAACACCAG TGCTGGCCAG 000960 000961 GGGGATTGTG CTTCCGGAAA TTCCCAACGT CCTTTCCCTG CTTGCCCAGG GCCATTCCAT TATACAGTTT CAGACCAGTC 001040 001041 CCAGGTCTGA AATGGAAAGA GATGTTACCC TAGATGCCCG GAGACAGCGG GGCCGCAGAG ACCTCGCACA GCCGAATAGC 001120 001121 AGTGGAGCAG GGAAGGAAGA GCTGAAGGAC CCTGGGGATG ATTGAACATA GCCTCTCACC AGCGCGCTCA GGAATTGTCC 001200 001201 TGAGAGCAGC AGGAGGAGTG GTAATCCTGC AAGAGAAGGT GGCTTTGTTG AGAGCCTTTA AATTCAGCTT TATTACTCGC 001280 001281 CAGTCTCCTT CCTTGTGTTC TGGCCATATT TCTTATCCAT TAGGCAGCCA GCCCTTCACA TGAGATCCTC CTGGTTTTGC 001360 001361 ATTCTTTTCT GCAATGCTGA CACTTC |
Predicted Small Protein
Name | NONHSAT004378_smProtein_1157:1342 |
Length | 62 |
Molecular weight | 6571.6297 |
Aromaticity | 0.0819672131148 |
Instability index | 86.1442622951 |
Isoelectric point | 10.2844848633 |
Runs | 12 |
Runs residual | 0.0439042773695 |
Runs probability | 0.0526187952657 |
Amino acid sequence | MIEHSLSPARSGIVLRAAGGVVILQEKVALLRAFKFSFITRQSPSLCSGHISYPLGSQPF T |
Secondary structure | LEELLLLLLLLLEEEELLLLEEEHHHHHHHHHHHHHLEEEELLLLLLLLLEELLLLLLLL L |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL L |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooo o |