NONHSAT006254
Revision as of 15:23, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006254 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4542 nt |
Genomic location |
chr1-:149816065..149820591 |
Exon number |
1 |
Exons |
149816065..149820591 |
Genome context |
|
Sequence |
000001 AGAGTTCCGA CTGAAATTTG AGAAGCTCTT TGCTATTCAA GTGGATATGT GCAGTTGACA GTTTGAGAGA TGCATCTAGG 000080
000081 GTTCAGTAAA GACAACACAA GCCTGTCTTT AGGGTCTACC TGTGAACTGT GAACACAGCA ATGAGAATGA TGGACATCAC 000160 000161 CTTTAAGTAT TTTTCTAGAC TTTATTACTC ATGTGTTTGT CATGAGGTGT AACTTAGTAG TTCATAGTCC TATAATGTAT 000240 000241 GTTATTGACT AGGTAGCATT TATTTTTCTA ATTGTTTCTG TTATAGTGCT GCCACATGTG TTTCCCAGAA ACGCATTTTA 000320 000321 CCCACAGTTC TTAGGGTTGG CCTGATTAGT TTAATTGCTG TCTGAACCTG CTTCTTACTG TGATTAGTTC AGGAATCTAG 000400 000401 ATCAAACTCA TTGGCATTTA ACATTTCAGG AAGTGAACTG AGTAACAACT AACTCAGCAG GGGAGTGTAG TATGCTATTA 000480 000481 TCTTTTGGGA AAGCAGCTTA TTTGCTTTCA AGAGGCAGCA GGAGGATGGA CTGTCTTTAG GTATGAAGGC AAGAATGATT 000560 000561 ATAGACAATA TGCAGAGGAG GACACAGTGT GGGAGAATCA GGGAACTGAG CCACTCATGG AGTTCAGCCA ACCTTGGATC 000640 000641 CCTGCTGCAC CTTTGGACTT CCAGTTAAGC CAATTTGTCT GACATATTTA CTTATACCAG TTTGAATCTT GAAATATTTC 000720 000721 AGGAATAATA ATTTCCTAGA TAAAAGGAAA GACCTTTCAT GAAAGGTCTC AAGTCAAATA GGGTCAATTA GGACAGAGTT 000800 000801 GCTCCAATTA CATATTTGGA ACAGATGTCC AAATGTTAAT ACTTGACTAA GGCTAAAGAC TAATATTACC ATCACAGGAA 000880 000881 AAATGTCCAG GGTTTTTTTT CAGATGTGAA ATTTTATTTA AAAATTTTAA ATAAACTAAA TCAAAAAATT TTAGTAGTTG 000960 000961 TACTAATTTC CTGGGGCTGT CAAAGTACCA CAAACTGTAT GGCGTAAAAC AACACAAAGT TATTCTTTCA TGGTTTTGGA 001040 001041 GGCTAGAAGT TTGAAATCAA CGTGTTGGTA GGGCCATGCT CTCTCCAAAC CCACTAGGGG AAGACTCCTG TCTTTCAGTG 001120 001121 TCTGGTAGCC CCACTTGTTC TTTGGTTTCT GGCAGCATAA CTGTAATCTC TACCTCAGTT TTTTCATGTA TGTCTCCATG 001200 001201 TTTTTTTACT TTCTTTCTTG AGATGGAGTT TCACTCTTGT TGCCCAGGCT GGAGTGCAGT GGCATGATCT TGGCTTACTG 001280 001281 CAACCTCTGT GCCCCGGGTT CAAGCAATTT TCCTGCCTCA GCCTCCCGAG TAGCTGGGAT TACAGGCATG CGTCAGCACG 001360 001361 CCCGGCTGAT TTTGTATTTT TGGTAGAGAT GGAGTTTCAT CATGTTAGTC AGGCTGGCCT CGAACTGACC TCAGGTGATC 001440 001441 CACCTGCCTT GGCCTCCCAA AGTGCTGGGA TTACAGATGT GAGCCACTGC ACCCGGCTGT CTCCATGTCT TCTTATAAGG 001520 001521 GTATCAGTCA TACTGGATTA GGGCCCACCC TAAAGACCTC ATTTTAACTT GATTACCTCT GTAAAGACCC TGTTTCCAAA 001600 001601 GAAGGCAAAA TTCTAAGCAA CTAGGGGTTA GACTTCAACA TATCTTTCGG GGGGACACAA CTCAACCCAT AACAGTAGTC 001680 001681 AATGGCTGTG GCAGGCTAAA TGTGGCTCCC AAATATGTCC ATATCCTAAT CCCTACAGCC TGTGAATATT ACCTTATATA 001760 001761 GCCAAGAGGA TTTTGCAGAT GTGATTCTGA GATTGAGAGA TTATGCCAGA TTATCCAGGT AGGCCCCAAA TGTAATCACC 001840 001841 ACAGTCCTTA TAGGAGAGGC AAGAAAGTCA AGTGTAGAAG GAGGCGATAG AAGGAGAGAG GGATTTGAAG ATTAATAGGC 001920 001921 TGCTTGCTTT GAAGGCAGAG GGAAGGGACC ATAAACCAGA AATAAACCTC TAGAAGCTGG AAAAGGCATG GAAATAGACC 002000 002001 CTCCCTTAAG GTCTCTGGAG GGAGTGCAGC CTTGATTTCT ACCGAGTAAA ATTGATTTTG TACTTCAGAC CTCCAAAACT 002080 002081 GTAAGAGAAT GACTGTTGTT TTAAAACCAT TGAGTTTGTA GTAATTTGTT GCAGCAGCCA CAAGAAACTA GTACAACATC 002160 002161 TATATAGAAT TTTTTCAATA ATTGGAGAAA TTTGAATATG GATTGCATAT TAATATTACT GAATCAGCAT TAAATTTGTT 002240 002241 AGGTGCAATA ATGTGATTGT AGCTATTTAG GAGAATATCC TATTTTTAAG AGACATGCCA CCATATTTAG GGAGAAGTGC 002320 002321 CAACATATTT GCAGTTTATT TTCAAATGGT TCAGAGGCTG TCTGTGTACA TGAGAAGACA AAGATAAGGC AAATGCAGCA 002400 002401 AAATTGTAAT AATTGGTGAA TCCAGGTGAA GGGACTATGG CTGGTCTTTG TACTTTTTTT TCCAACTTTT CTGTAGGTTT 002480 002481 AAAATTTTCA AAATAAAAAA ATGGGAAATA CTTTAAAAAT TGTAATCAAA GACATTAGTA CAGAAACTTT CATAATGTAT 002560 002561 TTTATTTTTA CAGTAAAATT AATTTATGTA AATTGATAGA ATTTTACTAA TTTCACTCCC AAGTTACATT AAAAGGCTTA 002640 002641 CATATGTTTG ATAATAGCAT ATGTAAACTA GAACTCTGAA TGATATCCAT TGGTCATAAT ACGTACTATG TAGCGGTAAT 002720 002721 GGTGACTTTT GTGATTGCAC AAGTCTAGAG ATGCCCCAAA TGACATTGAC TTAGACATCT GGTTATTCTA AGGCTGAAAC 002800 002801 TGAAGTTGAA TAGAAGGTTT TAGTCAAATA CTGAGATGAA AACTGAGGCA GTCCTGGCGG GGGGGAGTGA GTGTGTGTGT 002880 002881 ATATATACAC ACATAGACAT CATGCTTCTA AACATTTACA GAAAGAAAGG GTAGATTATC TACAAAAAAA TAAGAATCAG 002960 002961 ACTGATATGA GATCTTACAA ACCTAACCCC CTTCTCTTTC CTAAACTCCA GATTCTCATA TTTCTGACTT CCTATTTGAT 003040 003041 ATTTACACTT CGATATTTAC CAGGAGTCTT CAACATTTTG TTCAAAACAG TACTCTTGGT TTTCTTCCTC CAAGACTACT 003120 003121 CCTTACTCAT ATCAGCAAAT AGCAGCTCTT TTCAAGTGCT CAGTGTAAAA ACCTACAATT AATCCTTGAT TTCTCTTTCA 003200 003201 GTCAGCCTAT ACTAAATCAA TTTCATTTAA AATATCTCGG CTACTACTCT GCATCTCCAC TGCTACCATC GGCCTCTCCA 003280 003281 GTCACATTCT CCAAGAGCAC TCTATCTCAT TTAAAAGACA AAATCTCTGC AGTGGCCTGT GATGCTCCTT AATGGCCTAC 003360 003361 ATAATCCAGC CCTCAAGCAC CTCCGTGATC TCTGTAAAAC TTTCCCTTGG TCACTGTGCT TCAGCCACAT TAACCAGCTT 003440 003441 GCATATTTCT CACATTCACC AAGCTTGTTC CTGCCTTGGG GCCTTTGTAC TTACCATGTT CTGTTCTGAG AATACTCTGC 003520 003521 CTCAAGATAT CCTACAACTA TCTTACTGTA TTCAGCTCTC TGCTCAAGTA TTAACTGATG AAACCTGTCA TCCCTACTCC 003600 003601 ACTCCATGTT CTGCTTTACT TAACAGCAAT TGCACATATG GCCCCCTGAA TAATATACAT TTAGTCACTT ATTTTTACTT 003680 003681 ATCTGCTAAT TAAAATGTAG ACTTTTTCTA TTCTGTTTAC TGCTGTATTC CCAGCATGTT TTATCCGAAT GTGCAGTGGT 003760 003761 TTCTTTTCTT CTCCCTTATC GTGGGAAGTG ATGTGCACAA ATACACATAA TGGAGCCTGA ATGTCATATT GCTTTCATAC 003840 003841 CTGTGTGAAT TTTGGTAAGA AAGGAAAAGT AGCGATTGAC AGGTAATATA ATTACATTAA GTCACTCTCA TAGTTAGCTG 003920 003921 TTTATTGCTT TCCTGCTCTT ATTCTCAGTC CCCAGGACCA AATGTTGACC ACTACCTTCC CCCACATATA ATTAGGTTAT 004000 004001 TTACCGAACG CCATGCAGGT GGCTGTTAAA AGGAAGATAT ATACTTACCT TATAAACTCA ACTTTTCCCT GTTGTCTTTC 004080 004081 TGTCTCACCC CTACCTCCAT GCTTTAAATT AACTTTTCAG GCTTAGGCCT TATCTCTCAG TAGAGCCATA TAAGGTATGT 004160 004161 GTAAAAGCAG GAAAATGTTT CCTGGGGATG AAGCTTTGAA AAGCTTTTTT TTTTTTTTCT TTTGGCAATA AAATAAGGTA 004240 004241 GATTCAGCAC AATACCTAAT AACTAAAAAA TCTGTTTTTA ATTGGGTGGG GCAGACAGCA AGTGTGTCAT CCTGGAAGAT 004320 004321 ACTATTTGGG ATTTTATGTA GGTACATAAG AGAAAAAAGT GAACAAAAGC AAGGGGCTAC CAGGACGCCG CAGTATGCTT 004400 004401 AACATGTATT TTCTAAGTTT GTATTATGCC TTTATCTTGG TACTTTTATC TTCTGTTCTC ACTTGATCTT TTTGAAATGT 004480 004481 ATTTTAAATC CTAATAAAAA TATATAAAGT CTGGAATTAA TAAAGGAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT006254_smProtein_2966:3181 |
Length | 72 |
Molecular weight | 8299.8447 |
Aromaticity | 0.183098591549 |
Instability index | 44.7492957746 |
Isoelectric point | 9.90020751953 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0503066091301 |
Amino acid sequence | MRSYKPNPLLFPKLQILIFLTSYLIFTLRYLPGVFNILFKTVLLVFFLQDYSLLISANSS SFQVLSVKTYN |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEELLLL LEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHH HHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTT TTTTiiiiiii |