NONHSAT012685
Revision as of 15:45, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012685 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2958 nt |
Genomic location |
chr10-:34048641..34061608 |
Exon number |
3 |
Exons |
34048641..34049503,34054678..34056274,34061111..34061608 |
Genome context |
|
Sequence |
000001 AAAGTGGAGC CGTCTTTTCT GCACAGAGTG TGCACTATCA TCGTAACAGC AGAGACGGAG AGCAAGATGT GAGGAGGTTA 000080
000081 AAAGTCAGGG TCAGAAGTTC AGGTTGCTCT GACCCTCAAA TCAATTTCAA GCACTGTTTG TGACATTTTC CTGTGTTCCC 000160 000161 TCGCTTGATG TTAGTCTTTG CAATGAACCA CCGAATCAGA CTTCAGGGCT CATGGGACTT TGGGGTTTCA GTAGGGTCAG 000240 000241 GTCAATTTCT ACCTACCAGT GTACTGTCAC CTATGAGGCA AACCATTATC TAGGCGTTTG AGAACCTCAA AGTTTTGAAG 000320 000321 CTCTGAGGGG AAAGAGAGAG GATGAAGCGC TGGGGCCCCT GTGTCTTTGG GGCCTGACAT AGCTCAACCT GTGGCTTCAG 000400 000401 GGGGACCGTG TGCAGCCAGG TCACAGtggt accggaaagg gatcctgatc cagaccccaa gagagggttc ttggatctcg 000480 000481 tgcaagaaaa aattcaggCT GATGGCACTA AGGCTGAACC CAGAAGCTGC AGCAGTGGAC GGATGATGAT CTGAAGAAAT 000560 000561 GAGATCCCTG ATGGGCTTGG AAGTCATGGT TCCTGTAACC ATGATGTCAC ACCCTCGTCC TGACACCGAG ATGGGCTGGA 000640 000641 CACATCTGTC ACCCAGGGCA AACAAAATGC TTGGTCTGCA TCTTTCAGAA GAAAACTAAA AATCAAGTAA TTTCTTAGAA 000720 000721 GTTTGCTTGC GTGTGGCTTA AGTCTTCTTC TCCTGTTGAG GAAGGTGTTG AGTTTGACCA TGACAGCCCC ACCCAGTCCT 000800 000801 TGGCTCATCT CACCCATCAA AGAGGATCTG GAGATTCAGA GCTATGCCGT GGAAGACCTT GTCAGAGCAC CAGGCCATAC 000880 000881 TGTGCTGCAG GTGGGGTTCA GGTGCCCAGT GACAACCACC GGGGCCGCTC ATCCCTAAAC GTCTGTTGAA CTTAAAGTTC 000960 000961 TACTCAAGAC TTTCTACATT AAATACCCTT TCATACAGCA AAATCAGCCA TGTTCTGAGA TGTGAAACTG CAGCACAAAG 001040 001041 TTACTGTGGT CTCCACCTAT AGAAATGGAA TGTTACTTCA TAAAGCCCCA GGCCAAAAAA GAAACCCCAA AACTCTGAAA 001120 001121 CGACACCCTT AAATTTAACC TGAACATCTG GCCAGCCTCC TCCATCATTG AAACTTCTCC TGAGTGTTGG CATGGATCCT 001200 001201 ATGTTTCTCC AGCCAGGGAG CTTTGCTCCC CATTCTTGAT GGACCCACTG AGTCCCAATT TTCTACATTT TACTTGGGTC 001280 001281 ATTCCACCAC TTTGGGATGC TTTTCCTACT CTGTTGTACT TTAAAAATGT TTCTTCTTTC CTATTCTCAG CTTCACGCAT 001360 001361 TTGTCTTCTT TCTCAATTCA ACTTGCTTAG TTCTCGCTAC ATCAATTCCT AGAGCCATCC ATCTGCACTT Ctgaatcatt 001440 001441 taagttttgt ttggctacaa gtaatggaaa cccactctga gtaactcaag caagaactgg aatttattgg aaggacagtg 001520 001521 ggatatatca taagatcCAA AAAGAATTGA ACAAATAAAA TTTCAGAGGG AAGAAAAAGG GCAGCTCCAG TGACTTCAGC 001600 001601 AACAAGACAA CATAAGTCTT TCTAGAGCAT AGCTACTAAT ATTATTCAGC TGCAAGAGCC CCTCCCCATG AGAAACTTGA 001680 001681 TTGAAAATTC TGATTTCCCA CAGAGAAGAA TCTGATCGAC TCAGTTTAGC TTTGGTTGCC CAACTGCTCA ATCTTGCATG 001760 001761 AATTATTTCC AGCCAAGGGG ACAAGGTGTA TTATAGGGAC ACACCTGCTT TCTCCAAAGA AAAGATCTGG GCATTTCCTG 001840 001841 ATCATTTCCC TGAGAAGGAG GAATCATTGT GAGCCAAGAA GATACCTCAA GTATAATGAG CTCAGTTACA CTTTTTTGAT 001920 001921 ATCTGAGTAT TTGGTATGTA GTGTGCATTT TAAAAAACAT GTCTCTCTCC AGGACAATGT TAACCTCTTC CACGGTGGAG 002000 002001 TGGGGCTATG TGATTTTGTG CTTAATTTAC CTAGCTGGTG GGCCTCCAGT AGAGGCTGTA GTCGAGCCAG CTGATACCAC 002080 002081 ATCAGTTCTC CAAAGGAACA AAAGCTGCCC TTCCTTCCTT ATTGCAAAGT TTGACAAAAA GCAAAACGTG AAGAATAAAA 002160 002161 GCGACTTGCA TTGTCTAACA TCTACCGCAG TGTTTGAGCT GCAGCTGCTC CTCCTCCCCT GATTGTTTTC AAATATTTCT 002240 002241 TCAAAAAAGG CATTAAAGAA AAACACAAGA TATTGCACAG GGAACCAAAA CAAATCACAA TCTTCAAGGA CAAAGCATTG 002320 002321 CAAAATGGCT TACATCCCCA AATGGGAACA GATATGGTTG GAAATTAAAA CAATCTTTTT TATTTTAAGC GGAAATGCTA 002400 002401 GCAGATGCCA CAAGAAACAT ATGGAACTCG CCACAGACAA ATAGGGAATG CTTTCTGCGT GTGGAAGTAG AGCAAAGGGA 002480 002481 GTGACCACCT CTGACTGTCA GGGGGAACCA TCAGCTCGAA CTGTTTGCTA TGGCAGGAGG GAGTTTGCAG AGTCCGGAGT 002560 002561 CCTGCCCTCA TGAAAAAGCT TTAACGGTCT TGACTGAGTA ATTTAAGTCA TTCTTGTCAG GGAGTTTCAG AACACTATGC 002640 002641 ACAATTATAT TTATTTCACA ATGCATTGAT TCCAGATATC TTTTTAAATG TGCTTACCTC TGTGTGCGTT GTTACCTGTT 002720 002721 CCCTCTTTGA ATCTCTGAAT GAAACAAAAT AAATAGGAAA AAATGGAGAC ATAGAAGCAT TGTCCACAAG GCATCTCCCA 002800 002801 CTCTAGAGGT CTCCCAGCCC CGTGCTAGCT TGTTAATTTA TTATCGCTTG TCTGTCAAAC AAGGAAGATA TAATTTGCCA 002880 002881 CACAACATGT TTTCCTAAAG CAATGTTTTT GTACAATTTC CTGATTTCCA AAAATATGAC CAATGATATT CTGGTTGA |
Predicted Small Protein
Name | NONHSAT012685_smProtein_1958:2221 |
Length | 88 |
Molecular weight | 9571.1414 |
Aromaticity | 0.0689655172414 |
Instability index | 57.2528735632 |
Isoelectric point | 7.70623779297 |
Runs | 11 |
Runs residual | 0.0118226600985 |
Runs probability | 0.0470764882531 |
Amino acid sequence | MSLSRTMLTSSTVEWGYVILCLIYLAGGPPVEAVVEPADTTSVLQRNKSCPSFLIAKFDK KQNVKNKSDLHCLTSTAVFELQLLLLP |
Secondary structure | LLLEEEEELLLEEEEEEEEEEEEEELLLLLEEEEEELLLLLLLLLLLLLLLLEEEEEELL LLLLLLLLLLLLLLHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |