NONHSAT015351
Revision as of 15:51, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT015351 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2100 nt |
Genomic location |
chr10+:87337488..87366972 |
Exon number |
3 |
Exons |
87337488..87337655,87339248..87339360,87365152..87366972 |
Genome context |
|
Sequence |
000001 GAGAAAAACT TGAGTGAACT GAGAAGACAG ACAGCCCGTG ACCAAATTCT GAGAACTCCA ACCATTCACT GGTTGAGTGG 000080
000081 AAGAGAACAA GCTCAGAAAA TAAATGGAGA AAACATGGTA GGAGGAGCAG AAGAAAAATG AGGAGAATGC TGTCTCATGG 000160 000161 AAGACAAGGG AATTGGTGCA CATGGTATGG ACCCCAGCAA GTCCCCCTCT GCAGGTCAGG TGGGGATCCA GGGAAGATGC 000240 000241 TGGAGACCAT GTTACAGCTC CAATCCAAAG GGACTCTGAA GCTAGCAAAG CTTGGAGAAG CCTGAACAAG CTGGTCACCC 000320 000321 TCACTGTCAA AGACTTTCAT TTCCACGGAA GGGAAACTGA TGACCTGGGA CCATTGGAAG AACTAGTTAG TAATTAATCA 000400 000401 GTTGCATAAT CTTCCCTTAT CCTCTTTTCT AATTTCCCTT CAGGACTTTA AGGACCCCTT TGAAGATGAA AAGAAAGAAA 000480 000481 GTTTGAGTGG ACTCAATTAA AGTGGGAAGC AGGTGTCTAG GTTCCAGGGC TGCTCAACTC TGGATTCTGG CAGTTGATAG 000560 000561 AGGGCCTGGC CTTTTTTCTC AGTCAATTGA GCACTAGCCC AGGGTGTTCA GGAGATGCTC CCATTTTGTT AGAGTTTGGA 000640 000641 GAGAGGGAAA GATTAACTTC CTGTCCAAGA AGAAAGCCAC AGGGAGGTAG GAGGTTGGAA GTAAGGGACA AGGTGAAAGA 000720 000721 ACTCTCTCTA TTTAATGCCA GGGAAACAAA CATGGGAGCT TCGGGGAAGA CAGACCAGCC AAAATTCTCT GAAGGAAGAT 000800 000801 GTAAGTGAGG GAAGTCTCTG AGCTGGATGA CTTCACCACT GAAGTGCAAG TGAGAGAACA CTGGAGCATG GTGGATTGTC 000880 000881 AAGTGCCAAG CTGGAATAGT AAACGCGGTG GTGGGGAGTG GATCCGGTAA TAATGGAGCA TTTAGAATCA AGGCCAGCCC 000960 000961 TCAGACTGAA TGTGGAGATA ACTAGTTCTC TGCCAGTCTA TTATTTCTGA AGAAAGAGCT TGACTAAGTT TATTTTACTC 001040 001041 ACATTTTTTT TTGCTTGTCT CAAATCAAGT ATGGATGAAG CAGTTCTAAG GACTGCAAAG CTGCGCAGCG GGAACCAACT 001120 001121 CCCTACCGCA GTTATCATTC GCCTTTAAAG TCTCCGTGTC AAGACACACA GAAAGTGTCT ACACCAAATG GACAAACGTT 001200 001201 CCAGGGGGTT TCCTTCCCAA CTGCTTATTA AGAAATCCAT CCTCTTCACA TCAGTGGGAC TTCATTCTAC TCAAATTCCA 001280 001281 TCAATTCCCA ATAGCTCCAA CACGAGGACA AACCCTAGGA GATGAGGGTG CCATCTCAAG TCTCTTATTT TGGTTATTTA 001360 001361 ACTGAATAAG AAAATGTGTA TAACTGCAGC AAATGACTCC TATCTTTCCT GGAAAACAAA CGCAGCCATT TGCTGTGTCT 001440 001441 CACAATGTGT CCTTTAAGTC GCCTGCTCCT GCTGCTGTCT GTGGGAGCCA GAGCTGAGGT GCGCAGGACA GACCGCCTGG 001520 001521 TTTGGAAACC TTGGAAGCAT GGTCTGCTTG TATTACCTGG GGTCATAGAT TTAGCACTCA TAAAGTCATG TCTGTCTGTT 001600 001601 CCTTCTGTGT CTCCAGCCAA GGAAAGAGGA GACAGGAGTA ATCAGCCTAC TCAAGGAAAG AGGCAGGAGT GATTTGAATA 001680 001681 ATTATCTATC TTTTAGACAA AATACTGCAT TCTATTATGT TATGCAAATT CAAATAATGG GCTTTTTTAT GTGAACTACA 001760 001761 TCCGTTTACA TCCTCATTAT CCCAAGGTTT CGGTATTCGG CCAGGTAATG ACAGCTGTGA AAACAGACTT GGAAACTTAC 001840 001841 TGCTATCTTC ATTAATTTAC TGTAGGTAAC TGACCTAGTC AAACATCCCT GAATATGATA TAAAATTCAC AGACTGTGTT 001920 001921 TACCCGTGAA TCCGGCTGAA TTCCAGCTCT GCGTTTCTCA TCCCATATTA AACATGACGA CAGATGCACC AACAGAGGTT 002000 002001 ACTGGGGAAC CTCTCCCAGG CATTGTCTTG CAGAGATAAA GTTCTGTAAT TAAGCTGCTG TTCACCAATG TGGAAATAAT 002080 002081 ACAGTGTATT GGAAAACGGT |
Predicted Small Protein
Name | NONHSAT015351_smProtein_137:304 |
Length | 56 |
Molecular weight | 6146.1606 |
Aromaticity | 0.0545454545455 |
Instability index | 53.2054545455 |
Isoelectric point | 9.89410400391 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0448193291331 |
Amino acid sequence | MRRMLSHGRQGNWCTWYGPQQVPLCRSGGDPGKMLETMLQLQSKGTLKLAKLGEA |
Secondary structure | LEEELLLLLLLLLEELLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLHHHHLLLL |
PRMN | - |
PiMo | - |