NONHSAT023723
Revision as of 16:17, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023723 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1692 nt |
Genomic location |
chr11-:94275325..94277016 |
Exon number |
1 |
Exons |
94275325..94277016 |
Genome context |
|
Sequence |
000001 gagggaggga gggagTCCAG AGGCCGGGGG AACGTGCGAG CAGAGGCGCG GCCACCGCAT CCGTGGCCAG GATCTCGTGG 000080
000081 CCCGCCGAGA CGGTCGAATT GTGGAGGCAG CCCGCAGCGG CGTGGCCTTC AGAGTCTCTG CATTTGGTGA AGAACTTAAG 000160 000161 TTTTCAATGT GAGTGCTCAT AAGAACATTT CCTTTGCCTG CCAGCCCAGT AAAGGATAGA GAACAAAATG TTTTCTTAGC 000240 000241 AATCAAAACA TGTTCTTTCC TTTGGTCCCC TACCAAATAA GTCTGACTTG CCGGCTCATA GTAGTATTGC TTGTACCAAG 000320 000321 ACGCACAGGA CTCATAAACC AAAGATGAAG ATGTGACCCC CCCAAGGCCC TTGTCGTCAA GGAATTTATT GCCTGTTCAG 000400 000401 TGAGATGAAT GAATGAATAT CACTATTAAT TTTACCAAGC ACTTAAAAAA CATTTTCTGC ACCCATGAAA GTTATGCAAA 000480 000481 ATAGTTTGGA TGATAAAATG ATGACGAAGA TAAATATTCT AGCACCCAAG TTAAGGGTGT AAAGACAGTA TCGCACTGGC 000560 000561 CTCTTCTACC TTATTAGGCG ACACTGGAGA CATCTACGTC TACAGTCACT TGAGAAATTT TTTACCTACG GGTTGAATTT 000640 000641 GAATTTCTGG GTGTTCGCTT TGGTTTATGA TATTCAACTT TTATTCAGGG GATTTCCAAA TAGATCAGGG GCGGGGCTGC 000720 000721 TGACCTAAGG AGAGGAGAAA GTTTTGAGAG AAGTTTTAGT AGATCACAGC TGTGCATCAG TGGAGTCCCA CTGATACTAG 000800 000801 GGGAGAAATA GACAGTGCTG GGAATGGGGC AATCCTGCCA GGTGTTTTTG ATGTTATGCC TACAGAAAAT AAATTTGCGT 000880 000881 TAGCCATATG AATTTAAGAA TGTTTTCATT AAAAATCAAG TATAggccag gcgcggtggc tcacgcctat actcccagca 000960 000961 ctttgggagg ccgaggcggg cggatcccga ggtcaggaga tcgagaccat cctggctaac acggtgaaac tctgtctcca 001040 001041 ctaaaaataa aaaaaaatta gccaggcttg gtggcgggcg cctgtagtcc cagctactcg ggaagctgag gcaggagaat 001120 001121 ggcgtcaacc caggaggcgg agcttgcagt gagcccagat cgcgccactg cactccagcc tgggcgacaa agcgagactc 001200 001201 cgtctcggaa aaaaaaaaaa aaaaaTCAAG CATTGTGTGT AAAAGCTTCT ATAAAAGTGG CTTCCGGGTG GCGCTCTCTG 001280 001281 CAGGGCCACA GCCTCAGTTT GGAGACTAGA TGGAGGATGT TAGGTGTTCT GGCTAGGCCC ATCAACCTAG TAACATTTCC 001360 001361 TCCTGCACAG TAAAACCTTT CATAATGCTT CTGGGGTTTT TTGTTTGTTT GAAAAACAGA AATTAGAAAT CAAATATTTT 001440 001441 ATTTGAAATT AGACATTTCA GTGACTTTTT TCCACTCTTA CTTTTAATTA AAAGAAAAAG CTATAAATGC ACAAATTACT 001520 001521 TGTTTAAACG AAATAAAGGA AAAAGTGTAT TGGCTTCTCT TTTTATGCAA TTCAAGAATC CAGCCATTTA TTCACATTCT 001600 001601 TCTCCCTCTT CAGTTAAATA AGACATCACA GATAGAGCCT AACATTGTGT CTGGCACGTG GCCGGTAGGC ATTTGGGAAA 001680 001681 TATTACCCTG CT |
Predicted Small Protein
Name | NONHSAT023723_smProtein_1118:1372 |
Length | 85 |
Molecular weight | 9210.5921 |
Aromaticity | 0.0357142857143 |
Instability index | 59.6273809524 |
Isoelectric point | 11.0037231445 |
Runs | 14 |
Runs residual | 0.0326812253564 |
Runs probability | 0.0466601054837 |
Amino acid sequence | MASTQEAELAVSPDRATALQPGRQSETPSRKKKKKNQALCVKASIKVASGWRSLQGHSLS LETRWRMLGVLARPINLVTFPPAQ |
Secondary structure | LLLHHHHEEELLLLHHHHLLLLLLLLLLHHHHLLLLLEEEEEEEEEELLLLLLLLLLLLL HHHHHHHHHHHLLLLEEEELLLLL |
PRMN | - |
PiMo | - |