NONHSAT030694
Revision as of 16:39, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT030694 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1141 nt |
Genomic location |
chr12+:111073472..111079391 |
Exon number |
4 |
Exons |
111073472..111074306,111078188..111078322,111078829..111078954,111079347..111079391 |
Genome context |
|
Sequence |
000001 CGCCAGAAAC ATACGATTAT TGTCAAAGGG GTCCCCTTCC CAATTTCCTT TTTATGAGGG GTACAGGGGT AGGGTGGTTC 000080
000081 ATGGCACCAT TATTTATCTG GACCTCAGTT TTTAGGATCA AATTTAACCT TTCCCTCTCC CCTCATTTTC TCTCTCCCTC 000160 000161 TCTTGTGTAA GTCAGCCATC TAGGCTTGTG AATTCTTCTA GTTAGCTTGA GCTCACAGTT GTCTTGAAGC AATTCCTTGG 000240 000241 GCATCCAGGT ACAGTTCTCT TTCAGCACAG GTCTCTCCAA ACAGGTCTAT TTGTCTCCCT CCCCACGTTT CTCAGTGGGC 000320 000321 CCTTCAGAAA GAAAGCTGCA GCTCTACTGG GGAGGCAAGA GCTTGTCATT GAggaggctt gggccagagg caggaagacc 000400 000401 agttaggagt ctgtggaaat cgcctgggca agcaatggtg gccttccagc aaggacaggt gcagtgagag tgaccaggag 000480 000481 tgCAAGAACT GTGCTTCCCA CAGTGCTTAT GGCCGTGAGA CCATGTGGAA ATATACAATA ATGACCCTGG AGCATGGAGC 000560 000561 CTTCCTGAGA CTAGCTTGGT GAGCTTCTAC CTGGAGGAAA TGAAGATAGA AGGAAAACGC AATGTGACCT CTTTGATTAG 000640 000641 GACATAGATT CAAACACATG CAGATGGGGA GTCTTGATCA AGGAAATTCT GTTTTCTTCT TTGTGAAGCC TTTAATAAGA 000720 000721 TGAATATACT CTTCAACTCG AGAtctgaaa aagcaatgaa aatacttctt tttgttgtac ttaacacaat tttttgTGGT 000800 000801 TTCTTTTTAT CTAGGTACCT GATTCAAGAA AAAAGGTCCC TATCACTGTT CAGTCCATCG TCATTCAGTC TCTAAATAAA 000880 000881 ACGCTCACCC GACGGGAGGA CACTGATGTG CTGCAGCCGA CTCTCGTCAA CGCTGGACAC TTTAGCCTTT GCGTGAATGT 000960 000961 TGTTCTTGAG GTAAAGTACA GCCTCACATA CACAGATGCA GGTGAAGTCA CCAAAGCTGA TCTCTCATTC GTTCTGGGGA 001040 001041 CAGTTAGCAG CGTAGTGGTC CCACTGCAGC AAAAGTTTGA AATTCATTTT CTTCAGGAAA ATACCCAGCC AGTCCCTCTC 001120 001121 AGTGGAAACC CTGGTTATGT C |
Predicted Small Protein
Name | NONHSAT030694_smProtein_719:874 |
Length | 52 |
Molecular weight | 5938.0338 |
Aromaticity | 0.156862745098 |
Instability index | 76.062745098 |
Isoelectric point | 10.0243530273 |
Runs | 5 |
Runs residual | 0.0562026790914 |
Runs probability | 0.0336866278042 |
Amino acid sequence | MNILFNSRSEKAMKILLFVVLNTIFCGFFLSRYLIQEKRSLSLFSPSSFSL |
Secondary structure | LLEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooooo |