NONHSAT031886
Revision as of 16:43, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031886 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2129 nt |
Genomic location |
chr12+:128399955..128436097 |
Exon number |
5 |
Exons |
128399955..128400227,128418835..128418894,128429263..128429344,128433369..128433503,128434519..128436097 |
Genome context |
|
Sequence |
000001 ACATCAGCTC CTGGAAACAA ATGCACTTAA CCAGAAAAAC AGGGACATCA ACCAGCAAAG ATGCATCCTC ATTTAATAGA 000080
000081 GCTTGAAATT ACTATAATCT GTAAAGTACA GCGAGAAGAA GAAGTTTCAC CTGCCTGCAC ATCTGTCGTT GACTCTCCAT 000160 000161 CTGACTTGGA GGGACTCTGA GGGACCAACC TGAGCCTGAG AAGAGGCAAG ATTCCCCTTC AAGGACACAC TGGGAACTTA 000240 000241 CGGACCTCTT TCTCCATGGT GCAGAGCGCA GAGGCTACCT GAGAATATCC AGAGACTACA GAGGTCATCA AGTTGACGCA 000320 000321 TCAATGTTTA CATgtgaaca aacagacgcA TAATAGCTCT TGAGCTTGCC ATTGGGAAGT GAAAATCAAC TGCTTGAATA 000400 000401 AATGTAAGGA CTCAGAACAC CAGACATGGG TGCTCCAATC CACGTAGTGT TGAGGCAGTG AAGTTTGTGT TCCAGGAACT 000480 000481 TCAGAACTCC TGAATGTATT GGTGTTGATA AAAGGTGATG AGATGAagta gaatgaccat aaacttagag GTAGACATCA 000560 000561 CCTTGTGACT CAACAGCAGC CAATAAGATG GAAATAAAGG CCATGAAGTT ATCGGATGGC ATCTACAAGG AATACTTAGA 000640 000641 TGAGGAGGTG ACTCTGGTAG CAATTGTTCT TTTGTCTTTC TCACCTTCCT TCTTGTCCTG TCTGGGATGC TGAAGTGATG 000720 000721 GCTGGTATAC AGATGCCCTG TTGTGATGTT GAGATAAACA TGAGAATAAA AGTCGGCGAT TACAGATGGC AGAGAAGAGA 000800 000801 GAGAAAGATA GGATGTAGGT GGATATTGAC GGAACTAAGT TTCTATTGCA CAAGTTCTAC CACCAACCTC TGGACTTCAT 000880 000881 GATATGTGAG GGAGAAATAA ACTCCTATTT TAGAAGAGAT CTATGTTACC TGCAACTGAA CGGAATGCTT AATTGGCACA 000960 000961 TCCTATGTGC TCCAAACCTT CCTTAATTTC TGTGTGTAAG GCATACTTAG TCTTTACCCA TTATTCTGTT CACATTCATT 001040 001041 CACTTGATCA GCCTCCCAAC TCTATGGTAA AGAGTTTACT ACAGTTTACT CTATTAGTAA GGGAGATTCT GGAGCAAGCC 001120 001121 CCACAAATCA TAGATTGAAT ACCCATTCAT TAAGAGAGAG ATTTAAAGAT ACTTCTATCC AAACACATTT TAAATTTCCA 001200 001201 GCACCTTTGA GGTGGTGGAG GTTCATGGTG GTTGATAGGG TTTAAATGAC TTGTGATTCA AGCTCCATAT TACAATGTAA 001280 001281 CAGTGCAAAA GTTCAttttt ttaaatttat tttactttaa gttctggtat acatgtgtag aacatgcggg tttgttacat 001360 001361 aggtatacat gtgccatggt ggtttgctgc acctatcaaa ccgtcaccta ggttttaaga accacatgca ttaggtattt 001440 001441 gacctaatgc tctccctcat gttgcccccc aactccctga cagggcccag tgtgtgatgt tcccctccct gtgtccatgt 001520 001521 gttctcattg ttcaactccc acttatgagt gagaacatgt ggtgtttgat tttctgttcc tgtgttagtt tgctgagaat 001600 001601 gatggcttcc agcttcatcc atgtccctgc aaaggacacg aactcattct tttttatggc ttcataatat tccatgAGTC 001680 001681 TGGATTTGGT TACAGATAGA GCTGGACAAG CCTTAGCTAT ATCTAATGGC TTTTGACATG TTATATCAAT TTCTTACTGC 001760 001761 TTTTGTAAAT GAATATATTA AGAAGAAAAA ATTACAAATG ACCCTTTCTT CACAAACTTT TAGGGTAATC AAGTTCAGTT 001840 001841 ATTAAAAAAT GGATGTTTGC AACATTCATA GTAATTATTT TCAGaaaatt aaaaatgatt aaaaattata ttttCATCCC 001920 001921 ATTCAGATAT TATATATTTA ACTGTGAGAT AATTCTCAGA GATAAATGTC AACTTTTAAA AAATGCTAAA TAAATTAAAT 002000 002001 CAAAATATCC CCTCTAAAAT AAATAAATTA GCTCCGATTA TTTCTTCTTT TTAAATTTTT CCTTATAGTT GTAAAAATAA 002080 002081 AGTGAACGTT TTGGCTCATT TCCTCATTAA AGTTTGAATT TTCCAGTCA |
Predicted Small Protein
Name | NONHSAT031886_smProtein_1496:1666 |
Length | 57 |
Molecular weight | 6339.7084 |
Aromaticity | 0.125 |
Instability index | 53.0553571429 |
Isoelectric point | 6.48785400391 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0652711535064 |
Amino acid sequence | MFPSLCPCVLIVQLPLMSENMWCLIFCSCVSLLRMMASSFIHVPAKDTNSFFFMAS |
Secondary structure | LLLLLLLEEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHLEELLLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |