NONHSAT032518
Revision as of 16:45, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032518 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1295 nt |
Genomic location |
chr13-:25113482..25115542 |
Exon number |
2 |
Exons |
25113482..25114165,25114932..25115542 |
Genome context |
|
Sequence |
000001 GGTGGACCGC CCGGCAGGAA GAGAGGGGAA GGCTGAGCAG TGAAGGGGTC CCCAAGTCAG CCAAGGCAGA GTTCCCAGGT 000080
000081 ACGAATTCAG AGCCTGACGG TACTGGGCGG GGAGGTAGCC CCCACCTTCC TGAAGCCCCT TCCTTACCTC TGGGAGCGTG 000160 000161 AGGCTGGAGA CGCCTGGGTA GGTCTGAGGG TGAGCCCTGG GTGTGGGGTA GCTCCACCCT GCAAGTGCCT AGAGGCCCCA 000240 000241 CACCTCCAGC CTCCCTCTGA ATTCAGGGTT CTCTGTCCTG AGGCTGCCCA GGGGAGCCTG GCTGGGGCGA GATGGGCCGG 000320 000321 ACATGGGCCT GGGCGAGTCT CGCCACAGAG GGGCGCCGCT GAGCAGCCAG GCCTCCTGAG GAGTGGACAC TCTCCCGGCA 000400 000401 GGCCCTGGGA TCCGCCACCC ACAAGCACAC TTGGAGGCAG CATCCTTGCA GGACTCGCGC CGGAGCCTGA GCCCTCCAGC 000480 000481 CAGCCCAGCG CGCCACCGCC CTTCTGTCCC CAGCCACCCA CGAGAGAATC TGGGTCGCCA GGGCCTTGTC CTTCACCAAG 000560 000561 GCAAAGCCGG CTCAGCCTCA GAGCCACAGG CGAGAGCGCC TGTCTGCATG AGTGTCATGA GGACTGGACA TGGGTCTATC 000640 000641 AGGACCATCG GCATGATGTC AGCCAAGGAT CTCGTGGCCT GCCTCTGCCA AGGGGGGACC AGCACCTTGT CCTGAGCACT 000720 000721 TCCAGCCTCC CATTGCCTTC AACCTGGCTG CATTCAGCTG CCATGCCCCT ACCTCCTGAT GTGGCCAGCA CCCTCCAGGA 000800 000801 CTTCATCTAG GTGCACCCAA AGGCCGAGGA CGTTGCTGGC CAGCAGGAAA TTCCTGGTGC ATCCAGGAAG ACTTCCAAGA 000880 000881 GGTGGTGGAA CAGGGGGCGC CACACCCAGA CAGCTGTGTG TAACTGTGCA GCTTCGGGCT GCTGCAGGTG CTGGCCGGAC 000960 000961 TGTGTTCTGG GCACACTGGA CTGTGTCACT GCATGGAGGC TGTTGCCGGA GGAGGAAGTG CAGGCCCCAA GGCCTATGTG 001040 001041 CCTGGAAACC AGCTGGGGCT GCTGCAGGAG GAGGGCTGCA GGATGCTCCA GCTCAGACCT GACTCAGGGT TTTAGAGGGC 001120 001121 ACAGGGCATA AAGCTGTGGA CATAGACAGC CCTACTGCGC AGGAAGAGCA TAAACCAGCC AGAGGGCATG CATGGGGGCT 001200 001201 GCTGTTGCAT TCTGGTCTcc tttgaggtag ggaaagatgt gtttctttct attttatggg tgagcaaact gaggcagagt 001280 001281 ggtggagtga tttcc |
Predicted Small Protein
Name | NONHSAT032518_smProtein_992:1114 |
Length | 41 |
Molecular weight | 4105.6327 |
Aromaticity | 0.05 |
Instability index | 58.5525 |
Isoelectric point | 4.86773681641 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0198601963308 |
Amino acid sequence | MEAVAGGGSAGPKAYVPGNQLGLLQEEGCRMLQLRPDSGF |
Secondary structure | LEEELLLLLLLLLLLLLLLLLHHHHHHLLLLEEELLLLLL |
PRMN | - |
PiMo | - |