NONHSAT033842

From LncRNAWiki
Revision as of 16:49, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT033842

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2892 nt

Genomic location

chr13+:50964290..51104215

Exon number

6

Exons

50964290..50964427,50989225..50989338,51007549..51007686,51066787..51067189,51102002..51102200,51102316..51104215

Genome context

Sequence
000001 AATATCCTGA CCTCACTTTC CTCCCTCCCT TTAATCTCCT GCAGGTATTC TCCACTGGTT GAATGCAAAT GGAAGCCAGA 000080
000081 GGAAAAGGGA ACCCTTGACA CAGTTTTCAT ATAGATTGGC CTCCAGGGCA GACAGCAGGA GTGGGGTTTA ATCTGGACTG 000160
000161 AATTGGAGGA AAGGAACTGG CACCAGAGTG GAGGCTGGAA GGATGGTGGA ACTGACACTG GGACAGAACA CAGAAAACAG 000240
000241 AATCTAATGC TATTGCTCTG GCTATATCAA ATAAAAGTGT CAAGAGTGAG CATCCTTGCC TTGTGCTGAA TCACAAAGGA 000320
000321 ATACCTTTCA GTTTTTCTCC ATTGATTATG ATAGCAGTGG GCTTTTCACA GTGGGCTTTA CTGTGTTGAG GTACCCTAAT 000400
000401 GACAAGTTCA CCCCAGTGTT TTCTGAGGAG TCTACCTGGA AATGAGAACC ATCTGTCCTT CCTATAGTAG TTCTTCTCAG 000480
000481 AATGCCGACT CTATGCTAAT GGTGAGAAAG TAGCTTCCAG ATCAGACCCC CTAAAAATAT ATCTAAAAAC TCAACTCCTG 000560
000561 TGGTCATCTC TTTCAAGTAT TTAAACCTCA GAATTTTCTC CAGCAAGCAT ATAGGCCCCA TAGAGTCCAT AAGCTTGCAA 000640
000641 TGTCTTGGCC ATGTGTACCC ATGTGGTACA TTCAACCACC AAACTGGAAT ACGATATTGC ATTTCCTGGG CAGGATTAAG 000720
000721 AGTGAGCTCT CTTAGGCTCA GATGACCCCC ACAATCAAAG GTAAGAGGGC TGTAACTGAA ATATCACTCA ACAGAGGAGG 000800
000801 TCTGATGGCC GGGAGGACAG GAAGAAGGAA CCCACAATGA AGCAAAAGTT GCGTTTAACT CTGTCCTCAC CATTCCTCTC 000880
000881 CTGGACCTGT CCTAAACTGG AAGCTGGGGG AGGATGGAGT GCTGGAATGC TGCAGAAGTC TCATGGGAGG GCGCCTGGTG 000960
000961 TTCACCACAT GTGTACACTG TTGCACGACC AGATGGAAAT TTGAATGCTG GGGCTCAGTG GAACACCTGA AGGAAGCTGG 001040
001041 TGAGGCAGAT GTCCCGCTAT GCCTTCCAAG TGTCATGCAA CCAGTTCATG CCTGTCAGCA TCTCTGCCGG TGGACTCTGT 001120
001121 GAGTCAGCAA ATCTACAGAG CAGAGAGCCA CAAGTGGGGA CAGATGTGGT CAAATGCCAT TTAAATCAGT GATTCTCAAC 001200
001201 CCAGGAGTTG TCATGGCACT GGCCTTGAGT GAGCTGGACC AAGGGAAGTG GTAGAATTCC CCATGAAGGA CCAAGTGAGC 001280
001281 AGATAGAAGT TTCTCCATTT TAACTTTTTC TGAGTCAATT TAAAAAACAC CTAGTGCCTT TTTCTGTACA TAGTGCCTGT 001360
001361 GGGTTTGAAT TTAAGCCTAC CCAAATGTGC TTTTATCCCA CCTATTTTGA ACCTTGCATG TCTCCGGGAT AAGAATTAAC 001440
001441 ATAAGCTATA AATATTCTTC CAGGACTAAT TATTAACCGT GAATGTTGAG CGGCCTTGAC AAATATAAAA TGTTATATAT 001520
001521 AGGCCCAAGA GTAGATCAGA GAGTTATCTA TCTACTTCAA GTTGAGACTC AGAGTTTTCA TTAAACTCTG CAGTCTCACA 001600
001601 GTATTTCCAA TCATTTCAGG GCAGACGAAA GTTCCGTGGT ATATCTTTTT AATGTGGCAG GCCTCGAGGG TGGATTGAGT 001680
001681 TAGGCAATTT ATCCCCTTTT ATGCCCTATA TTCACATGCA ACACTCCAAT GGGGTAACAT AAAACCACAG ACAGGTTTCT 001760
001761 TTACACCGGT ATTTAAGGGA ACTAGGAAAG CAGCCCAAAT CATGTGGAGA AAGCTGGGGA AAGAAGTATC AGAGGAGAAA 001840
001841 GAGGACCTTA GCAGAAATGA CAAAAGTGAA AAACCTTCCT AACTCCTTCA GACATGATGC TTAAAATTGT GTTTCTTTGG 001920
001921 CAACTTATAA TTTTCTGAAG CTGGTTCTCA GCCTCAGATC CTCCCCCAAG GTTTTTATGT TGTATTTTGA CTCAGTAGGA 002000
002001 GGGATCCAGT CCCAGACCTT CCGGCTCTCA CCAGTACACC ACAGGCTAAC GCCATCCAGC AATCAGATGA CAGGAGGAGG 002080
002081 AGAGGTTCAA AGAGGACTAC TGTATTTCTC AGAAGGGGCT GGCTCATCTA CCCTCCACTG TATTACTCAC ACTGTAGATG 002160
002161 CAGAAAACAT GTCAAAGTAT ACTGGGGCTC TGCAATGCAT GCACCCACAC ACATGTACAC ATACGCACAG ACTTCCAAAC 002240
002241 TAAAAAGGAG AACAGAGCTC AAAAGGGGAC AGTGTGCAAC TGGTGCTCCA TGTTGTAAGG ACCTCCCCTC CTGCGGGCGC 002320
002321 GGCTACCCCA GCAGGCTTGT CCGGGCATGT CCGCCCAGTT GACGCCAGGC CAAGTTTTAC GGGAGGAATT GGCCTGTGTC 002400
002401 TAAAGCTGGA GTTCAGCTTT GCTGACTATG GAGACTGATC TGTTGGTTGT CAGCAAAGAA AAGGTGGTTT CAAAAGAGCA 002480
002481 GCAGAGGACT CTGTGCTAGT TGCTACTGGC CAGCTTTGAC TCCGATTGGA AGCTTGAAAA ACATAGATTG GAAGCTATGC 002560
002561 AGAATATCCA GTGACAGAAA TAAATCAGAG ATTGCCAGGG GCTGAGGGTG AGAGGAAGGA GATTGACTTC AAAGGGGCAC 002640
002641 AGATAATTTC TCAGGGTGTC GGAAATATTC TGTCTTGATT GAGGTGGTGA TTACTCGACT GTATATGCTT GTAAAAATTT 002720
002721 GTAGAACTGT GTGCCTGAAA AGGGTGAATT CTACTGTATG TAAATTATAA CTCGATAAAC CTGATTTTTA AAAACACTGT 002800
002801 AGTTTGGGAG GCCATATAAA ACCAAATAAC ATTTTGAGTC ATTAATGCCT CTTTAAGAAT ATTTTGGATT GATTTTTTTT 002880
002881 ATTAGATTAA AA
[back to top]

Predicted Small Protein

Name NONHSAT033842_smProtein_1976:2242
Length 89
Molecular weight 9671.76
Aromaticity 0.0681818181818
Instability index 51.7875
Isoelectric point 7.08587646484
Runs 13
Runs residual 0.0163636363636
Runs probability 0.0429592488416
Amino acid sequence MLYFDSVGGIQSQTFRLSPVHHRLTPSSNQMTGGGEVQRGLLYFSEGAGSSTLHCITHTV
DAENMSKYTGALQCMHPHTCTHTHRLPN
Secondary structure LEEEELLLLEEEEEEEELLLEEEELLLLLLLLLLLEEEEEEEEEELLLLLLEEEEEEEEE
LLLLHHHHLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -