NONHSAT033842
Revision as of 16:49, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033842 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2892 nt |
Genomic location |
chr13+:50964290..51104215 |
Exon number |
6 |
Exons |
50964290..50964427,50989225..50989338,51007549..51007686,51066787..51067189,51102002..51102200,51102316..51104215 |
Genome context |
|
Sequence |
000001 AATATCCTGA CCTCACTTTC CTCCCTCCCT TTAATCTCCT GCAGGTATTC TCCACTGGTT GAATGCAAAT GGAAGCCAGA 000080
000081 GGAAAAGGGA ACCCTTGACA CAGTTTTCAT ATAGATTGGC CTCCAGGGCA GACAGCAGGA GTGGGGTTTA ATCTGGACTG 000160 000161 AATTGGAGGA AAGGAACTGG CACCAGAGTG GAGGCTGGAA GGATGGTGGA ACTGACACTG GGACAGAACA CAGAAAACAG 000240 000241 AATCTAATGC TATTGCTCTG GCTATATCAA ATAAAAGTGT CAAGAGTGAG CATCCTTGCC TTGTGCTGAA TCACAAAGGA 000320 000321 ATACCTTTCA GTTTTTCTCC ATTGATTATG ATAGCAGTGG GCTTTTCACA GTGGGCTTTA CTGTGTTGAG GTACCCTAAT 000400 000401 GACAAGTTCA CCCCAGTGTT TTCTGAGGAG TCTACCTGGA AATGAGAACC ATCTGTCCTT CCTATAGTAG TTCTTCTCAG 000480 000481 AATGCCGACT CTATGCTAAT GGTGAGAAAG TAGCTTCCAG ATCAGACCCC CTAAAAATAT ATCTAAAAAC TCAACTCCTG 000560 000561 TGGTCATCTC TTTCAAGTAT TTAAACCTCA GAATTTTCTC CAGCAAGCAT ATAGGCCCCA TAGAGTCCAT AAGCTTGCAA 000640 000641 TGTCTTGGCC ATGTGTACCC ATGTGGTACA TTCAACCACC AAACTGGAAT ACGATATTGC ATTTCCTGGG CAGGATTAAG 000720 000721 AGTGAGCTCT CTTAGGCTCA GATGACCCCC ACAATCAAAG GTAAGAGGGC TGTAACTGAA ATATCACTCA ACAGAGGAGG 000800 000801 TCTGATGGCC GGGAGGACAG GAAGAAGGAA CCCACAATGA AGCAAAAGTT GCGTTTAACT CTGTCCTCAC CATTCCTCTC 000880 000881 CTGGACCTGT CCTAAACTGG AAGCTGGGGG AGGATGGAGT GCTGGAATGC TGCAGAAGTC TCATGGGAGG GCGCCTGGTG 000960 000961 TTCACCACAT GTGTACACTG TTGCACGACC AGATGGAAAT TTGAATGCTG GGGCTCAGTG GAACACCTGA AGGAAGCTGG 001040 001041 TGAGGCAGAT GTCCCGCTAT GCCTTCCAAG TGTCATGCAA CCAGTTCATG CCTGTCAGCA TCTCTGCCGG TGGACTCTGT 001120 001121 GAGTCAGCAA ATCTACAGAG CAGAGAGCCA CAAGTGGGGA CAGATGTGGT CAAATGCCAT TTAAATCAGT GATTCTCAAC 001200 001201 CCAGGAGTTG TCATGGCACT GGCCTTGAGT GAGCTGGACC AAGGGAAGTG GTAGAATTCC CCATGAAGGA CCAAGTGAGC 001280 001281 AGATAGAAGT TTCTCCATTT TAACTTTTTC TGAGTCAATT TAAAAAACAC CTAGTGCCTT TTTCTGTACA TAGTGCCTGT 001360 001361 GGGTTTGAAT TTAAGCCTAC CCAAATGTGC TTTTATCCCA CCTATTTTGA ACCTTGCATG TCTCCGGGAT AAGAATTAAC 001440 001441 ATAAGCTATA AATATTCTTC CAGGACTAAT TATTAACCGT GAATGTTGAG CGGCCTTGAC AAATATAAAA TGTTATATAT 001520 001521 AGGCCCAAGA GTAGATCAGA GAGTTATCTA TCTACTTCAA GTTGAGACTC AGAGTTTTCA TTAAACTCTG CAGTCTCACA 001600 001601 GTATTTCCAA TCATTTCAGG GCAGACGAAA GTTCCGTGGT ATATCTTTTT AATGTGGCAG GCCTCGAGGG TGGATTGAGT 001680 001681 TAGGCAATTT ATCCCCTTTT ATGCCCTATA TTCACATGCA ACACTCCAAT GGGGTAACAT AAAACCACAG ACAGGTTTCT 001760 001761 TTACACCGGT ATTTAAGGGA ACTAGGAAAG CAGCCCAAAT CATGTGGAGA AAGCTGGGGA AAGAAGTATC AGAGGAGAAA 001840 001841 GAGGACCTTA GCAGAAATGA CAAAAGTGAA AAACCTTCCT AACTCCTTCA GACATGATGC TTAAAATTGT GTTTCTTTGG 001920 001921 CAACTTATAA TTTTCTGAAG CTGGTTCTCA GCCTCAGATC CTCCCCCAAG GTTTTTATGT TGTATTTTGA CTCAGTAGGA 002000 002001 GGGATCCAGT CCCAGACCTT CCGGCTCTCA CCAGTACACC ACAGGCTAAC GCCATCCAGC AATCAGATGA CAGGAGGAGG 002080 002081 AGAGGTTCAA AGAGGACTAC TGTATTTCTC AGAAGGGGCT GGCTCATCTA CCCTCCACTG TATTACTCAC ACTGTAGATG 002160 002161 CAGAAAACAT GTCAAAGTAT ACTGGGGCTC TGCAATGCAT GCACCCACAC ACATGTACAC ATACGCACAG ACTTCCAAAC 002240 002241 TAAAAAGGAG AACAGAGCTC AAAAGGGGAC AGTGTGCAAC TGGTGCTCCA TGTTGTAAGG ACCTCCCCTC CTGCGGGCGC 002320 002321 GGCTACCCCA GCAGGCTTGT CCGGGCATGT CCGCCCAGTT GACGCCAGGC CAAGTTTTAC GGGAGGAATT GGCCTGTGTC 002400 002401 TAAAGCTGGA GTTCAGCTTT GCTGACTATG GAGACTGATC TGTTGGTTGT CAGCAAAGAA AAGGTGGTTT CAAAAGAGCA 002480 002481 GCAGAGGACT CTGTGCTAGT TGCTACTGGC CAGCTTTGAC TCCGATTGGA AGCTTGAAAA ACATAGATTG GAAGCTATGC 002560 002561 AGAATATCCA GTGACAGAAA TAAATCAGAG ATTGCCAGGG GCTGAGGGTG AGAGGAAGGA GATTGACTTC AAAGGGGCAC 002640 002641 AGATAATTTC TCAGGGTGTC GGAAATATTC TGTCTTGATT GAGGTGGTGA TTACTCGACT GTATATGCTT GTAAAAATTT 002720 002721 GTAGAACTGT GTGCCTGAAA AGGGTGAATT CTACTGTATG TAAATTATAA CTCGATAAAC CTGATTTTTA AAAACACTGT 002800 002801 AGTTTGGGAG GCCATATAAA ACCAAATAAC ATTTTGAGTC ATTAATGCCT CTTTAAGAAT ATTTTGGATT GATTTTTTTT 002880 002881 ATTAGATTAA AA |
Predicted Small Protein
Name | NONHSAT033842_smProtein_1976:2242 |
Length | 89 |
Molecular weight | 9671.76 |
Aromaticity | 0.0681818181818 |
Instability index | 51.7875 |
Isoelectric point | 7.08587646484 |
Runs | 13 |
Runs residual | 0.0163636363636 |
Runs probability | 0.0429592488416 |
Amino acid sequence | MLYFDSVGGIQSQTFRLSPVHHRLTPSSNQMTGGGEVQRGLLYFSEGAGSSTLHCITHTV DAENMSKYTGALQCMHPHTCTHTHRLPN |
Secondary structure | LEEEELLLLEEEEEEEELLLEEEELLLLLLLLLLLEEEEEEEEEELLLLLLEEEEEEEEE LLLLHHHHLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |