NONHSAT033912
Revision as of 16:49, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033912 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2964 nt |
Genomic location |
chr13+:52027277..52030240 |
Exon number |
1 |
Exons |
52027277..52030240 |
Genome context |
|
Sequence |
000001 GTCAGGCCCT ATCCTTTCAT TAGCATATTT AAACAGCTCA GGGGCGGGGG AAGCTTGTAG GCCGGCTCCG GGGACAGTTA 000080
000081 TTGAGCACGC GCAGAGGCGG GGCGTCGGGT GCGCGCGAGC GGGCGGGCGG GCCGACCCGG AGGCGGGCTT CGGGAAGGGG 000160 000161 CGGGGCCGGA CTGCGGAAGG ACCGCGAGGT gggggcgggg gccgcgtccg cgcgcgcggg gcggccgcgg cggTGAGCCT 000240 000241 GCGCGTCAGG GCCGCCGGCC TCTCCTTGGC TGTTGGAGGT GATAGGGGTC GAGGGGAGGG AAAAAGGGGC TGGCGTCAGC 000320 000321 CGCCCCTGTG AGGTGGCCGT AGCGTGGACG AGTAAGAAGG GTTGAGTAAA GTGGACAAAC ACCTGGTTAG GAGAAGAGGG 000400 000401 CAGGCCCGCA GCCGCCCTCC GGAGGAGGAC TCGGGGCCTC GCGGGCGCCG GAGGAGGTTC CTGGGCCTCG GAgggccgcc 000480 000481 ccggcgcgcc gccccggcgc gagcgggcgc gggcgggggA GGGGAAGTGA GAGGTTGTTT ATGACCGGGG ACTAATCTCC 000560 000561 TCCGCGAGTC CCAGCGCTCC CTCTGGGGAG TGCGGTTGAG GGGCTGTCCT CGCACGGAGC CTCGCTCGGC CTCGGGGGAG 000640 000641 CCACGAGAGG TGGGAGTTGG ACCCGCAGCG GGCCAGGAGC CCTGTCATTG GAGGACCCGC CAAAAAGGAA GCAAACCCTC 000720 000721 TTTTTCTTTA TCCAACCCCA AATAGCTAGG GCCTAGGGGG AAGACTCACA TATCGATAAA TGGTTTGTTG CCCGTTTTAT 000800 000801 TCTCTGGGAA ATACAACTGA TCTTACCAAA GAAATAACCT GTCTCTTGCC GTGTTTACTT AGAGCCATAG AATACCTGTT 000880 000881 TCAGAGCTGA AGGGGACCTG AGCCCATGAT AATCCATTAC CTCGTGAGAA AGCGGAAAAA CTGACTTCAG CTTGCCCAGA 000960 000961 TGGCGCAGAG AATGGGTTTC CCGTAACCCC GCCTGTGTCT TTCCTTCAGC CTCGTCCCAA ATGCCGTGGG AGGGAAGGCA 001040 001041 CTCTCTGTCA AGCTGCTGTC ACCTTACCTG AAGTAAGGAG TCCACGCCTG CATGTCCGAG GAAAACAGTT TTCTCAAACA 001120 001121 CATTAGTTGA AAAACTGAAG ACGCTGCCTA AAATACAAGC TGAGTTAGAG ACAGCCCTTG TAAGACTAGG TAGGTATTTA 001200 001201 CAGGGCCTCT CCCACTAGCT TTGTTTTTCC AGAGTTTGTT CTTTATCCGG AAATTCTTAA TTTGCCTACT GATCATTTAA 001280 001281 AGAAAGGGTT CTATTAACAT TGACACAGAA GAGACACTTT GTGGCACTTT TTAAAAATCT GAGTCTCGTG ACTTGGTATA 001360 001361 ACTTCTGAAA CTTACTGTTA ATTTATAGCA GAGCTATTTG AGTAATATGC TCTTCTATGA GTATGAACAA TAGAAGAAGT 001440 001441 GTGATTTTTA AAGTGATTTG GACTACAAAA TAAGAGCATG GAATATAGGC TTTAcagcca gtacttgctg aggatgtact 001520 001521 gtgtattagg tgtggtgcat ataaaaaata aataaaatgt ggtccctgtc ttcaaagagc ttaTGTTTTC TAGGAAAATG 001600 001601 CTACATATTA CTAGCTACTC CAAGGCAGAA AGTTGTTAGA CACCAAATCA GAAAAAATAA AAATGTATTA CCTTGGGGTG 001680 001681 ATGCAGGAAC ATTTTCCAAG GTTTCAGCTT TGCCTTAGTG TTTCTTAAAC GGATCATAGA TCTGAAGATA AGAATCAGAG 001760 001761 TTCTATGGCA AAATACGAGT TATTTTACCA GTTATAAAGA TGAAATTTGT CTTTCAACTT GATCATTTGC ATAATTTTAT 001840 001841 ACAATTGCTC TTTAGTTCTT TATATTTGTG CTTTTCAAAC TGGTCTGTGG ACCCCAGCCT ACTGAAAACA TTCTCTAGGA 001920 001921 TCATAAGAAT TTATTTTAGG AGTCTGTTCA TTATTCAGTT TTAAGAAACA CTGTCTTAAA GGACTGGTAG GATTTGGATA 002000 002001 TGGGTAAAGG AAGGGGAAGC TGCTAGTGAA AAGATCTTCC CGACATTGAA AATGTGAAGA AAGGAAGTTA AGACAGCATT 002080 002081 GCTGAGGGCT TCCTGAGGAA CAGTGAAGTT CAGCTAGGTT GGAGCAACAG GTGCATGTAG AATAGTACAA GATCTAGAAA 002160 002161 CACAGGTGAG ATCTAGACAG TAGAGGGCCT TTATTCCAAT CTATGGAGGT TTTTTTTCCC CTATAAATTG GAGATTTATT 002240 002241 TTTCAATTGC GTTGCTAAGT AGAAGCAATG TTTGAAAGAA ATCAAACTAG ACTACTGAAG ATTAACATGC GTTCACAATG 002320 002321 ACCTTACCTA TTATTACAGT TATTCGAAAT CATTTTTCAG TGGAGCCATt gtcacaggat ccttggagtg tcacttttcc 002400 002401 agctggaaaa atggcacctc tgcccgaatt ttggtcgggc tcattctgcc caccagtccc agcaggctgc actctgctca 002480 002481 tactacggcc tggatcccac acctgccaag tgcaagccag gtgcggagca gcgaggggtg tgtgagcgag caagcatggg 002560 002561 gtccggccac tgtatacagc ccggcatgcc agctgcagga gggcgggcag ctctaggggc tggccccttg caaggctgtg 002640 002641 gctggtccag gtgtactgca agcagcttcc acagctggca ccagggaatg cagtggcacc tggaagcttg gagatgccag 002720 002721 gagctgcaga gccccaaaga ggttgtcaca gggagctcct aggtctaggc ttcctaaagg gccacagctc ttctctcctc 002800 002801 tcttccccct tctctttcct ttcttcttct cttcttctct cttctcttgt tgtgttgccc acaacatggc aagcaagggg 002880 002881 catatttcag cccgtttgtg ttacagctct ttcagccatg ccatttggca ggtcccgagt tattgtccca catccaggaa 002960 002961 gaat |
Predicted Small Protein
Name | NONHSAT033912_smProtein_2555:2761 |
Length | 69 |
Molecular weight | 7194.0387 |
Aromaticity | 0.0735294117647 |
Instability index | 65.2455882353 |
Isoelectric point | 7.75067138672 |
Runs | 9 |
Runs residual | 0.00814785373609 |
Runs probability | 0.0243969459656 |
Amino acid sequence | MGSGHCIQPGMPAAGGRAALGAGPLQGCGWSRCTASSFHSWHQGMQWHLEAWRCQELQSP KEVVTGSS |
Secondary structure | LLLLLLLLLLLLLLLLEEELLLLLLLLLLLLEEELLLLLHHHHHHHHHHHHHHHHHHLLL LEEEELLL |
PRMN | - |
PiMo | - |