NONHSAT038177
Revision as of 17:05, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT038177 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7775 nt |
Genomic location |
chr14+:88490907..88498681 |
Exon number |
1 |
Exons |
88490907..88498681 |
Genome context |
|
Sequence |
000001 ttgaaggcag tatgcttggt aaaagtcatc gccattctct aatcttgagt acccagggac acgatacact gcggaaggct 000080
000081 gcagggacct ctgcccagga aagccaggta ttgtccaagg tttctcccca tgtgatagcc tgagatatgg ccttgtggga 000160 000161 agggaaagac ctgaccgtcc cccagccaga cacccgtaaa gggtctgtgc tgaggaggat tagtgaaaga ggaaggcctc 000240 000241 tttgcagttg agataagagg aaggcatctg tctcctgctt atccctggga atgaaatgtc tcaatgtcaa acccgattat 000320 000321 acgttctatt tactgagata ggaggaaacc gccttatggc tggaggtgag atatgctggc ggcaatactg ctctttaatg 000400 000401 caccgagatg tttgtgtaca tgcacatcaa ggcacagcac ctttccttaa acttatttat gacacagaga cctttgctca 000480 000481 catgttttcc tgctgaccct ctccccactg ttaccctatt gtcctgccac atccccctct ccgagatggt agagatagtg 000560 000561 atcaattaat actgaggaaa ctcaagagac cagggctggc gcccgtcctc cgtatgctga gtgccggtcc cctgggccca 000640 000641 ctgttctttc tccatacttt atctctgtgt cttatttctt ttctcagtct cttgtcccac ctgacgaaaa acacccacag 000720 000721 gtgtggaggg gctggtcccc ttcaGTTCTA AAGCCCACTT GGCTCATTCC ACATGTGGCA GTATTTTTTT ACCATGTGAA 000800 000801 CACCAAAATG AATTCGTGGC AAATGCACCT CCCGTTTATT GCAGGCTTGC ATGAAGGAAA TGATTTCCTA TGATTCTGCT 000880 000881 TACTGCTTAA AAAAATTAAT CAAGTTTTCT GCCTGACAAG TAAGTAACTG TGTTTATTTT CTGTTCATGA CTAGGCAAAA 000960 000961 GCACATAACA TCCCTATGTG TCCAGTGAGT TATGAAAGTT CTTTAAAAGC AGTGCATTAG CCATGGATCT TCCTGCTATC 001040 001041 TCTCCCCTGC AGTTTGCTGA GAATGTTTTC CATAATAGAA CCAGGCTTAT CACAATTTAT TCCTGCCTTA CTGACTACTA 001120 001121 GGTCATTGCC TAGAGTTCTG AACCCCGGGT TGGAAGCTGT TAAAATTTAA TAAAAACTAC TTTAGAGAAA ATGGTCACTC 001200 001201 TCCCTTCATC CTCTCTCACC TCCCTCTGGC TCCTTGACCC CCATCCCTCC CTGAAGATGC TGGTCGCTAA GGCTCTTTTA 001280 001281 ATAGACTTCC TTATTGTCCC AGGTTTCTGG GAATTCATCA GTGATAGCTG CCATGGGTAT GTTGAGAGGA TACTAtatgc 001360 001361 tgagaactcc acatctgata ttttacttaa tttccccaca atattatgaa gtagatgtta ttttccccat tgtacaataa 001440 001441 gagatggaaa gctagagagg ctaaAAGCAG AACAAGAATT TGAACCCAAA TGCCTGTGAC TGTAACCACC ATACATATAG 001520 001521 CCTACCTGTT TCCATGTTGT TCTAGCAGGA TCCTTGTTTT CTTCCTTCTT ACAGTAAAAT CTGACTGATC ACTGTTGAGT 001600 001601 AACGGATCTT AATTAGGTCG AGATGCGGAA GGAGTTTGCT CCTGTAATTT CAGGAGGTCT TTGCATATAC CTATTATTGC 001680 001681 AAATAGATTT CGCTTTATTG GAAAAAGGCT ATCAGTATTC CCTGGGGACT CTATTTTTAC AGCTGAGACT GCTGCTCTCT 001760 001761 ATCAGTCACT ATGAAGTAGA AATTCTGATT ATGATATCAC ATAAGATTCA AGGCCACTAG TGATAAATGT TCAAGAGGAG 001840 001841 GTGTGTTCAG CTTTGTGATA CACTATTGTG ATAAAAATAT GGCACAGGAT TTTAAAAATA TGAAAATGTA AAAGGAATAC 001920 001921 AAATATGATA AATGATTATA AGTCTATGTA TGGAATTTAA TCTATTTTTC CTAAATGCTG ACTGTAAGCG GTTTAGCCCA 002000 002001 GTGATATAAA CTGTGCCTGA GAAAGGTCCC AGTCAATTTC ATGCTGTTCA TGTGCCATTT ATTTTTACTT TTTAAGTACA 002080 002081 TTGGGAAAAT ACATAAGAAA AAATGTACAT TCATCTTTTT AATGATACTA TAAAAGATGG TGAACAAGTT AATCGGAAGA 002160 002161 AAAGAAAAAC AATTCATCTA GACATTCTTG CAATGAATTT TTGCCAAATG CTTAATTTTT ACTAGATGCT AGGAGAATTG 002240 002241 GGAAGCCTTA AGTCTGACAC AGGATCCAGA GACAAAAATT ACAAAGTAGT GAGTGCTATG GTAAGAGTTA AGTAAGAAGG 002320 002321 TTGGATAAGA TGTCCACTAC TAGCTCAATC TTGAAAGCGT CCAGGACACT TGCCTctgag acctaaacga ctgagtgggc 002400 002401 attgatcaag agtgggaggt tgtttcaggg tcagcacatg caaaggacag gctccatttt aggaaaatga aagtagttca 002480 002481 gtgttattga agctgatggt gagggaggaa gtggcagaag ataaaggctg gaaagaaaca agtcaataag aagccacaaa 002560 002561 aaagttgtaa gtagatgaat gacatgatcc aatttgtgct ttaggaagat tacttttgtc tcagtgtcca atataggtgg 002640 002641 agggaggcaa aatgagaagc agagagttat ttgatggtgg aaagagagag ctgttcaaac aaacaggcaa gattcagtgg 002720 002721 agacctgaac taggcaggtg gcatcttggg ttgcaagaaa tggacaggta caaaagatat ttagaaggAC Aagaaggtat 002800 002801 tttagttgga tgacgtacat ttcaaaggaa caaggaagaa gaatggtctg ggaatagtat tggtgagcca ggagtcttca 002880 002881 tttgagtggg ctgcagggaa agttgtgtcc tcagaagatg ccacatttca gttatggtac aatgggaggg aacattcaCT 002960 002961 GTGGCAGTGG AATCACCAGA GGGCCACAAG TGGATCAGAT TGGGAAGTGG GATAATATTC CAGCCTGAAT TAGATTGTAC 003040 003041 Aatcccaggg agcaggaatg aggaaggaaa gggagtagaa tagagaaaaa gggggagtaa tatgaggatg cattataggt 003120 003121 ctaactgctt ccaggtatga ctgattgctc aatcccatag gaccatcttc taagaagttg taataattta atcacagaga 003200 003201 aaagtgaaga atttagccac tggctgcagc ctccaattgg tcaaaggttt gtctcacaga gcatgaacct ccctgcacct 003280 003281 ccatataaca catatttgag tgcaacaggg ttcttatata agtatcatca gggtggcccc agggaaggag gtgagaagtt 003360 003361 gcaataatgt caggttgcgc ttgcatgcaa gtgatcagaa tataccctaa gagcaagtta tctcagtggc agcttgaatg 003440 003441 aaatcggtga gccaaagcat ataaattagc acataaaagg tgcataatac aGTCCACCTT CTGCACTATT CAGGGCCACT 003520 003521 TTCCCCCATC ATTATATCCA AATTGCATAC TACAATATAG GCCCCCATTT TTGTGAGAAT AAGTTGTCCT TATCTATTCT 003600 003601 ACAAGAGAGG AAGCACTCGT CCAATCTGTC ACAAGGTCCC CTTCAAGGGA ATGGTCCACC AGAGTCTGAT TGAGGATAag 003680 003681 taagacaaac ttctgttcca tagctgaacc tggatctgaa gtcataagtt atatttatct ccaacctctt ccagcaattc 003760 003761 tatatttccc tcactatggg ccagcacatt agctatctgt gttggtctcc cggtgggatg acacaaacat tcatcgttga 003840 003841 gaggcttgaa cctttatttg ccttatcctt tttgggccat agttgttgca atacaattac gcatcagctt ttgacaatac 003920 003921 aattatgtaa gtacaataca aactatgtac aaatctgtta tcgctggaca caggagcacc aagagatacc cttgtgaaac 004000 004001 ccttgggttc cagatgtgtt tcttcttgtc ctcactggta acagcaactc tagctattca gcagagtcag gggctattac 004080 004081 ttttaatgat gtgctaacta tttattccct gctggcccat aagcatgagg agttcaactg atattttcag cttcaaattc 004160 004161 aggggaccct tacattttat ctggcagaat tattctcttt cccatccaca gtcacaatta agatttctaa tccaatagag 004240 004241 gctaaagttg caagatggaa gatagtaaac acaaattccg taatcacttg gttcccagtt ttatataatt gagctactgg 004320 004321 ggattcaaaa ccatatattg gtcattggct taatgtatat gccatatcct ggaagatcac attcaaccct gctagatgtt 004400 004401 gtccccaagc tgggatctta atgaaccttt aatatgattt ctaccattct cttaggatgg ctgcttctgg gtgatgggga 004480 004481 acaaggaaca attattagat tctgtttcat gcactcatta ccttgattct tataaaacag ttcccttggt gtgtggcaat 004560 004561 gctgtgtgaa atatgtgttg ataagtcaag cattctaaaa acttttggat ggtaagccag tggaggtact acagacaagg 004640 004641 agggcaaacc cagggtctat tcacattaag gatcaattcc tacaaggaca aatttctgtc ctccccaacc cccagggtag 004720 004721 aagatgtcta attgtaatct acctgatacc aagagactgg ctgatctcct caatctctgc tgttgacaaa ttgagcattc 004800 004801 aagactacca ttagctagac tagaaggaat tcatgcaaac ctttatctct gccatgagac cacccttttc ttgggctcac 004880 004881 tgtccagcat agaagcagtc aatgagagag agatgaagtg acatacatga tgaggtagcc ttccccactg gttgctgaga 004960 004961 gaactgttgg tggtagatgt tctctggtag gtagtaatag ctgcaaaatt tgtgtccatt tttataggtc aatctatatg 005040 005041 cctcatcctg tgacatcatc attccccagt tttctatttg attccttcca gactcctcac cagttattca tgtcaagtgg 005120 005121 atgacaaatt tactgctcac cactttcccg ctggctaatt tactttaacc gctgctcttt agagatacca ctgagtggat 005200 005201 ctataatatg tcagcagtgt atttttgact agcatctgtt gacacacttg tgagccaggc atgaagtttt ttttcaatct 005280 005281 tctatcagtt ggtcataggg aatcccctat aagccataag tgcaagatga gataaaaggt atcagagtga tagaaacaga 005360 005361 tgacatgcaa atttgtgcca cctctttgtg caatttactc ttgccttttg gacctgcctc agtcccattt ccaggcacga 005440 005441 cattccataa tgtagattgc tgctgtggct aacccaatct atgatttagt ggatttaatc atacacagtt ggctgtagtt 005520 005521 cagatatttg ctcctttcaa atctcatctt gaaatttgat ttccaatgtt ggaggtgggc cctagtggga ggtgtttggc 005600 005601 ccacgaggag tggatcccac atgaatagct tggtaccact ctcattagtg agtgagttct tgctctttta gtttcaatga 005680 005681 cagctgcttt ttaaagagtc tggcacctct acttctctct ctctctcctt ctctctctct ctctcttact tcctctcttg 005760 005761 ccatgtgatc tctgcacata ctggctcccc ttagccttcc accatgagtg gaagtagcct gggcccctct gcagaaacag 005840 005841 aagctagcac catgtttctt gtacagtttg cagaacagtg agacaaataa atttctttcc tttataaatt actcagcctc 005920 005921 agctattcct ttatagcaat actaaatgga ctcagaaaca gctcacactt ggtgtcttgt gatgttataa ttaggcattc 006000 006001 aatctctaca aatatccggt agcaggccag gagctgcaaa agaaATTGCA GTCTGCAAAA GCCAGATAAC TCTTTGTCAA 006080 006081 CTTTGAAGGA GATTCTCATT TCCTACAATT CCTTCATCAT GGAGAGCTCT ATcacgatta catctattga gttttatagt 006160 006161 tcaatagtct ggctctgcag aaggctcctg cagagccttc tgttaactat ggcccaggaa aaacttccat atctcccaga 006240 006241 atatagacca aagcagtatt tttaaatgca gtctattctt ccaccaaaat tcaaaaaggc tcaccaagca gtgtacctct 006320 006321 ttcttagtgg taggagttgc aagtagaaca atgtgtttat ttctttgtaa gaatgtccta gcatattctg gattgctgga 006400 006401 tatctactaa gttgaccaat atcatgggaa cctgaacttc attgggttta tcacctaccc tctgatatgc atgtatctta 006480 006481 ctgggtcacc tagggtatta acatttccaa taaccatgac atcatcaata cagtagacaa gtgttatacc atgacgttct 006560 006561 gcagaaggct aagatgatgg aaatacctag ctattatgtt gtgacaggga acaggatagt taacacaaga gtgagtatgt 006640 006641 agagttgccc ctctaaatgt aaagtcaaat tccttttgat catttttgct gatggaaatC TAgtcaacaa acattttctg 006720 006721 taaagggtca tacaataaat atttttagcc acgtggttct gttataatta ttcaactctg cttttgtagT CTGTggtcat 006800 006801 atttggccca tgagctgtag tttgcctacc cctgACTTAA AAACAAAGTG TTTTCCAGAT TAGTAGCTGC ATATAAAACG 006880 006881 CCAAAGACCA TGTTGATCTT TTTCATGAAA GGTACCACAT TTTGtctcca atgacccata tgtttttttc aggatacaca 006960 006961 taaaccaact gaatagggat atgatgagac caccacacct tcatccttta aatctttaat gTGTAATAAA GATTTACACA 007040 007041 TTAAAAGAAT TACACATTGT GTAATTCCTT TTAGGATGCA GATTGCTTCT TATTTACCAT ATAGGGCATG GATGTGTACA 007120 007121 TAGGGGTGTG TGTGTGTGTG CACGCATTTG TGTATATGTA GGAGGAGAAG GAATTGCAGA aatttcaggg gtttccacag 007200 007201 agcccttgct accatgatgg cccttaatct acaagtcgga gaaacaatgg gagggttctg ccagatgctt aaaataactg 007280 007281 tgtatttgga gactagaaaa ataactgaga atttttgtcc ttgcgattga acaatgagaa cacatgggca caggaagtgg 007360 007361 aacatcacac accggggaca gttgtggggt ggggggaggg gggagggata gcattaggag atatacctaa tgataaatga 007440 007441 tgagttaatg ggtgcagcac accaacatgg cacatgtata catatgtaac aaacctgcac gttgtgcaca tgtaccctaa 007520 007521 aacttaaagt ataataataa aaaaaaagaa aaataactga gataaacttg agctaacatt tcatttatca cctagcttcc 007600 007601 atatacccac tctaactgga attccatgat gaagacttga gtccactagc atcggaaaac tcggatccca tatttaacag 007680 007681 tgctcaaaaa caaatatacg tactgccttc cccagtgtac aatagtctat caatggccac aggtcccttt tgggaaggat 007760 007761 tacaaggaat atttc |
Predicted Small Protein
Name | NONHSAT038177_smProtein_1190:1408 |
Length | 73 |
Molecular weight | 8094.4169 |
Aromaticity | 0.111111111111 |
Instability index | 51.4694444444 |
Isoelectric point | 4.63385009766 |
Runs | 14 |
Runs residual | 0.0535279805353 |
Runs probability | 0.0743432508139 |
Amino acid sequence | MVTLPSSSLTSLWLLDPHPSLKMLVAKALLIDFLIVPGFWEFISDSCHGYVERILYAENS TSDILLNFPTIL |
Secondary structure | LEELLLLLLLHHHLLLLLLLHHHHHHHHHHHLLLLLLLHHHHHLLLLLLHHHEEEEEELL LHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooo oooooooooooo |