NONHSAT041524
Revision as of 17:12, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041524 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1738 nt |
Genomic location |
chr15-:33009471..33011208 |
Exon number |
1 |
Exons |
33009471..33011208 |
Genome context |
|
Sequence |
000001 AGAACACAGT TTAAGGGGTG CGCGCGGAAG TGGGAACCAG CCGGTGGCCG CTGCCCGGCG CCAGAACGTC TACCATTCAG 000080
000081 CCCGGGCGTG CGCGGGGCGG GGAAGAGGCT GGAGTAGAGA AGCGAGCGCC CGCGAGTGCG TGGCCGGTCC GCGAGCGCGT 000160 000161 GTGGTGTCTG CCTTGTGAGC ACTGCGGGTT CGCTGGACCC CGCGGCCAGG GCCGCGCCCC GCACCGCAGC TGTCGGATTA 000240 000241 CCCACCGTTC GGTTTTCCGC TGTGGCTGAA CACAGCGGCT CTGCCCTTGC CAGTCTCCAT CTCACCTCGG GGATCGGCAA 000320 000321 ATGCACACGT CATGGATTCT CCGGATGCTC CAACCCGCGG ACTCCAATGG GCGCCCCAAG ACGCCCCCAG ACCCAGCGCG 000400 000401 GCGCCCCAAG CACATGGGAC CCTCTCAAGG CAACTCGCCG CGCAGTCAGC GGCCGACTAG CAGGTCCGGA TGTTCCTGCG 000480 000481 CTCTGGCGGC CTGGACTTCG CGCCCTCGCT AAGCGGGCGC GTCTGCCAGG CGCTGCTGCC ACCAGCACCA GGAGCGTGTT 000560 000561 CGGGGGCCTC CGGGAGGTGG AAACGGGATG TGGGGGTCAT CCTGCCCGCT CCTGACAACT TTTTTTCCTA CGTTTCCCTG 000640 000641 CAGACCCAGA GCAGCGAGGT CACGGTGTCC GCGGCCTCAG CAGGAAGGAC CCCGCGATGG TTCTTCACAA TTCACCCCCG 000720 000721 CGAACAACGC ACCCGAGCCT GCGCGCACGG AGGGCTGCCG CGCGTGGAAC TGAGCGGGTC CTGGGTTGGT TTGCGGTCCT 000800 000801 CTTCCCTCCG CCCACTCACA TCCCTGCCGG GTGCGTCCGC GCTCACCTGT CAGTGCGGCG GGTCCTCGGG GCCTGCGCTT 000880 000881 TCGACGCGTG GCGCTGAGTG CGGCCGCGGC CAGAGCCGCC GGGGCTCGGC GCGGGGTCAG CGGGACCGAG AGTGACGCGG 000960 000961 CGGCCGTGCA CTGGGTCGCC CGGTCCGCGG AAGGCGCACC GAGTGCCAGG CATCGCGCCG TCTCCCGTTT AAATGCCGGC 001040 001041 GGCAGAGCGC GGCGCCCGGG GCCGCGCCTC TCCATTGGCC AGGCGCCGCC GCCGCCGCCA GACCCGCTAT CCGCCCCCTT 001120 001121 TCCCGGTACT GCCCCCGCCC CCCGCACCCC TCCTGCTTCC CCGCGGGGTC CCCTCTCCGC CCGCCTCGCC TCTTTGTCTG 001200 001201 CTCCCCCCGC CCGGGCCGGC TGGGAGAGGT CACCCCAGGG AACCGCGCCT GGAATGCACA GCAAATCACA TTTTCCGCTC 001280 001281 CCGTTGGAGA GGGAAGAGCG GGAGGAAATC CCCCCGGCTG GCGGCCCCTC ATTCCTTCTC TGCCCCAGGT CTGGGCTTTC 001360 001361 CCTGTCGGCC GCCCGGCATC GCCTGCGTTG GTCCCGCGCT CAGTAGCGGA GACTGCGCTG GGAAGAGCGA GATCTCCGTG 001440 001441 GGATCGTGCC AGATTCGGCC ATTCTTCCCC TCTGGAGGGA ACGGGACTGC GGGATGCTCT GGTCGAGCGG CCGTCGTGGC 001520 001521 TCCCCGGCGG CCCCGCCCGA GGCCCCCAAC TTCGAGGGCG CTGACCCCGG CGCCCCCGTT AACCTGGCGG GCTCGCTGGC 001600 001601 CGCCAGCAGG AGCCTGTCGC CAACATGACA CCCTCCTCTC CTCGCCCGCC AAGGGTTCTT TCAGCCCAGA TGCCGGCGGC 001680 001681 CTCCCCTGTG AGTGTACAGA GGGGAGTCAC GGGAGGAGAA TAAAACTAAA AGACCGTC |
Predicted Small Protein
Name | NONHSAT041524_smProtein_320:511 |
Length | 64 |
Molecular weight | 6964.8594 |
Aromaticity | 0.031746031746 |
Instability index | 95.9587301587 |
Isoelectric point | 11.9083862305 |
Runs | 7 |
Runs residual | 0.0338516358925 |
Runs probability | 0.014194867136 |
Amino acid sequence | MHTSWILRMLQPADSNGRPKTPPDPARRPKHMGPSQGNSPRSQRPTSRSGCSCALAAWTS RPR |
Secondary structure | LLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLEEEL LLL |
PRMN | - |
PiMo | - |