NONHSAT047005
Revision as of 17:18, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047005 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3221 nt |
Genomic location |
chr15-:70863297..70878945 |
Exon number |
2 |
Exons |
70863297..70865770,70878214..70878945 |
Genome context |
|
Sequence |
000001 GGCATCCAGT TGGGGGTCCA CTGCCGCAGT GTGGGAGGTT TGTTCTTTCG CTCTTTGCAA TAAATCTTGT TACTGCTCAC 000080
000081 CCTGGGTCCA CACTGCTTTT GTGAGTTGTA ACACTCACTG GGAAGGTCTG CAGCTTCACT CCTCAAGCCC AGGAGACCGC 000160 000161 GAGCCCACCG GGAGAAACGA ACAACTCTAG ACGCGCCGCC TTAAAAGCGG TAACATTCAC TGCGAAGGTC TGCAGCTTTA 000240 000241 CTCCTGAGCC AGCGAGACCA CGAGCCCACC AGAAGGAAGA AACCCCGAAT ACGTCTGAAC GTCAGAAGGA ACAAACTCCA 000320 000321 GAAGCGCCAC CTCAAGAGCT GTAACACTCA CCGCGAGGGT CCGCGGCTTC AGTCTTGAAG TCAGTGAGAC CAAGAACCCA 000400 000401 CCAATTCGGG ACACAATACC TATAATCCCA GTACTTTAGG AGGCCAGGGC AGGCGGATCA TCTGAGCTCA GGGGTTGGAG 000480 000481 AGGAGCCTGA ACAACATACC GAAACCCCGT CTCTACAAAA AGTACAAAAA TTAACCGGTT GTGGTGGCCG GTGCCGGTAG 000560 000561 TTCCAGCTAG TGGGGGACTG CGGAGGTGGG AGCTGAAGCG GGAGGATCGC TTGAGCCTGG AGGTTGAGGC TGCAGTAAAC 000640 000641 AGGGATTGCG TCAGGACACT CCAACCTGGG GAACAGAGCG ATGCCCTAAA AGGCTGGCTG AGCTGACTGG AGTCCAATCT 000720 000721 TCTGACTCTC AATCCTCCAC CATGCCGGAA TCCACTTGCA TTTCTGGCAA GAAGGTTGTT TACGCTCAAG GTCTACAGGG 000800 000801 ATGGAAGTGG CACCCAGTGA GAGGGCTCTG CCGATGGAGC TGTGAAGGCG TCGACCTCAT TCTGACGGGC TTGTTGAGAC 000880 000881 TGGTCAGCGC CTGGGCAAGA GGGCAGCTGG GATATGTCTA TGCCATGTTT GACCCATGCT ATTGTTTTTT CCTCCCTTTT 000960 000961 TACTTTCTAT CTGCACTCCT CTCCTTCTCT TCCACTCCAT TCCCCTGCCC ACCTCCACAC TGAAAATCGA GGCCTTGGGA 001040 001041 GGAGAGGTCA AGGGAGGAAA GAATTCTGGA AAGAATTCTT CCACACTTTA TAACAAGGAG CCCAGGCACT AGTATTTTCC 001120 001121 TCCTGCCATC GGCGGCCAGC CATAAAAAGG GTTGATCCAT GAGTTGTTTC TCCAACTCTT CGAGCAGCTC AGTTCATGGC 001200 001201 ACTGCTATAG TTTAGACTAA CCCGCTCAAC ATTGTTAGAA ACATTTAGAA ATGTCTCCCC CTTTGCCGCA ATTTCCCTCT 001280 001281 CTCTGCCGGT GTCTGCTCTA ACAGCTGGAA GAAATTTCTC CTTCATCTGC TATATTCAGC CTTTCACTAA GCGCCATCAA 001360 001361 TTTTGCCTTT GAAATTTCTT TTGTACTGGT CTCCTTCTCT CCTTTCCACC GCTAATCCCG GGGCCTGTCT CTAGCCCTGT 001440 001441 GATTCTGAAC TGTTTAAGAA CCTCCTGACA GAGCTCCCTG CCTCTGGCTT CTCCACCTTT GATCCATTCT GCACAGCCAA 001520 001521 GACAGATTCA TTTTTCTCAA GCTCTGTTTG CATCTTAGGA GGCCTCAGCT CAAAACCCCT AGGCTCTCTA ATGTCCTTGG 001600 001601 CATTGCCCAG ACAGCTTTCA CAGCTCCCTC TCACTCTACC TTCTTCCCAG ATCGTGGCTG CTTTTGCCTC CTGTACTGTT 001680 001681 GTAACAAATC ACCACGAACT TGGTGGCTTA AAACAACGGA AACTTATTCT CTTACAGTTC TGTGGCCAAA AATCCACACT 001760 001761 GAGTCTTATA GGCCTAGATC AAGGTGGCAG CAGGGCTGTG ATTCCTTGGG AGGCTCCCAG GGAGAATTCT CTTTCCTGGC 001840 001841 CTCTTCCAGC TTCTCAGGGC TGCAGGCATT TCTTGGCTTG TGGCCACATC ACTCCAGTCT CTGCCTCAGT GGTCATATTG 001920 001921 CCTTTTCTTC TCCCTGTAGT GAAATCTTCC CCTGCTTCCC TCTTATAAGA TACTTATAAT TACATTAGGA GCCCATCTGG 002000 002001 ATAATCCAGG GTAATCTCCC CATCTCAGAA GCCTTAACTT AATCACATCT GAAAAATCCC TTTTCCCATG TAAAGTAGTA 002080 002081 GTTATAGGCT CCATGAAAGG GACGGGGACA TGGATCTTTG GGGGGACCGT TATTCAGCCT CTCATCATGG CCAGCTTAAT 002160 002161 CCTTCCACTT CCCTACTCGC TACTACAACA AGTATCAGTT GGGTATCTAC TATGTGCTAG GCACTGTTTT AGGCAATAGG 002240 002241 AATCATAATG ACTAATGAGC CTTTTCGGAT TCAGTCTCCT GCAGGGTGAA CTATCCCTTT CCTGAGCTCT TTACCTCTTA 002320 002321 GAGCTTGGTA TCATTACATA GCATGATCAT CACATACTAT GTATGTCTGT GTGTTTGACA TGTGGTTCAT AGCTGGTGAA 002400 002401 CGGTGCTCTT CGTTTCTATA GGCAGGTAGG ATGGACGTGC TTCGTAGGGC CTTTCTCCGC AAGCCCTGAC ATACACAGCA 002480 002481 CAGAGATGGG ACAGCCCCCT ACTACATCCT GCCAGATGTT GCTGGCTTAT TTTAAAATTA GAAACGCCTA TACAGTACCA 002560 002561 TAAACCAGTG ATGCCAACTG GTTTATACTC CATAAGTTTG TACTCTTGGA AGTGCTAGGG TTGGTTGCAG CCTAATATTT 002640 002641 AGGGAGAGTT TTGAAAGGCA CTGTGACTTG TAGCTTCACA CCTGTCTTCT TAAAAGCCTG GCCCTTTCCC GATTTCAGGT 002720 002721 TGACATGTGC CTCCTGCAGG CACTGACACT GAGGCCTTAC CGGTGACTGT TTCCTTATTG GTAAGTGTGT TGCTTTCCTA 002800 002801 GGTGGAAACT CTCTGAGGAA AAAGATCACG TTACACGCAC ACAAGCACAC ACATACACAT CTTTGTAACT CTCTGGCCCC 002880 002881 CCATTGGATC TAGCAAAGAT AACTTGGATG CTAGATATTT GCATACCAGC CAGTGTTGTC CAGCACTTTC GTTCAACTCT 002960 002961 TTGACAACTA TCGTCACATT CCTATACTGC TTGTGCTATC ATTTGATTAA TGTTTGTATT TAATTTGTCT CAACTTTTAG 003040 003041 CTTGTGTAAA CTTATTTTAA AAGGAAGCAT TTGCATCTCT ACCATAAATA GAAGACCAGA GTCATTTATC ATAAATAAAG 003120 003121 CATAACTGTA AAAATAAAGA TACTGAAAAT GAAATAATGT TATTCCCCTA AGAATTAAAC AATAAAATAT TGAGTAATAA 003200 003201 AATTGAAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT047005_smProtein_935:1111 |
Length | 59 |
Molecular weight | 6354.4406 |
Aromaticity | 0.0862068965517 |
Instability index | 43.6948275862 |
Isoelectric point | 9.43011474609 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0380514204044 |
Amino acid sequence | MLLFFPPFLLSICTPLLLFHSIPLPTSTLKIEALGGEVKGGKNSGKNSSTLYNKEPRH |
Secondary structure | LEEELLLHHHHHLLLHHHHLLLLLLLLLEEEEELLLEELLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |