NONHSAT047468
Revision as of 17:20, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047468 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1725 nt |
Genomic location |
chr15-:78206242..78208382 |
Exon number |
3 |
Exons |
78206242..78207653,78207982..78208271,78208360..78208382 |
Genome context |
|
Sequence |
000001 AGGAGGCCAT GGTGAAGCTG AAAAGCAGCT TTACGGACCT CCCGAAGGAG AAGGCAGATG GGACGGAGCA GGTGGAGAGA 000080
000081 CGAGAGCTTG GATTCGTCCA GCCTTCTGGA GTGACAGATG GCATGAGTGA GCAGGAGGCC AGGGCATGGG CACGGGGAGC 000160 000161 TGCAGGGCCA TCGGAGGGAC CCTAGTGTCT GAGCCGTGTC CTCTTGCAGG AGAGTCCTTC ACCGTATATG AAAGCCAGGG 000240 000241 GGCAGTGCCA AACACGTGGC ACCAGGAGAT GGAAGATGTC ATCAGGCTGG CCCAGAAGGA GGAGGAGATG AAGATTTTTA 000320 000321 TGAAGTGAGC CTGGACAACA ATGTGGAGCC TGCACCAGGA GCGGCCAGGG AGGGTTCTCC CCATGACAAC CCCACTGCAC 000400 000401 AGCAGATCGT GCAGCTGTCT CCTGTAATGC AGGACACCTA GGAGCACCCA GGCTTGCCCA GCAAACCCTG CGTGCCATTC 000480 000481 TTTTACCAGG CAGCCGAGAA CAGGGAGATA AACATCATCA TCTTCTAAGA GCTGGTCAAG AAATTTAAAA CAACAACAAC 000560 000561 AACAAAAAGT TACAGGGTTC ATCTCCTACA CAATTCATTT ACTCCATTTG AATGCTAGAG CCACTCACAT TTATTTGTGT 000640 000641 TTCTAATTTA CCGTTTAAAT TTATTTGTAA AAAGTTAAGG GAGAGTTGGT CTTTCCCTGA TGTTCTTTCT GGCATCCTTT 000720 000721 AGCATTTTTA TTTTTTACTT GATAATTGTA GGTCATTAGC ACGCATATCG AGTTTGCCCT TAGGTGGTGG GAATTCATAC 000800 000801 ACACAAAGAC CCACTATTTG CACAAAACTA TTCTTGCTGG TTTGGAACAG GCTGCCATGC TTTTTAAATG TTATTGCAGC 000880 000881 ACATATATTC ATTACAGAAT TCAGATAAAA TGTGCTTATG TTCTGCTATT ACGTTTGATT GAATCCTAAC CACAGTGAGC 000960 000961 TCTTCATTAG CTCAATATGT GGTTTGCCCT CAAGTGCGCA CTGTTTATTA CTTTGTAATA TGCCACTGTG AGTACTGACA 001040 001041 TTTAGAGTTG TTTAAAGGCC GAGAACTGGA AACAGCCTTT CCCCTATTTT CTGTGTATTG GGGATGGGAG TCATAACATT 001120 001121 TTGGGGAGCT TTTTAAATCT CACAGAAGAG GAAAGTGGCC TGCTCTGGCA GGTGTGTGCA GGATACAGTG TGTTTCATTT 001200 001201 GTTCTGGTGC CAAGAATGAG CACTGTACTA TGGTAGTTCC CTTAGGATTT GTGTGTGCTC TGGGCTTATG AAGATATTGC 001280 001281 ATCATGAGCT GCAGCAGTTG TACCCTTTCT CGATGACCTA AAAAGGGATT ATTTCTGAGG AATGAAAGGC TCCCATCATT 001360 001361 GACTGTGGAT GTGGAAAACC TTTTCTAGCG TAGAGCATTT ATATCTACAA TACATTTTAA AGTCAGAGTT CATGTTACCT 001440 001441 GTTTTAATCA CATGAGTATA TGTCCCAGTA CACAAAAGGG CACCGGTTGG CATTCTTCTT AAGGTATTTA GTGAAGATCA 001520 001521 TAAGAAATCC TTTAAGAGTT TAAATGTCCC TGGAAGAGGC ATACGGGCGC TAGTCAAGAA TGAATTCGAG TGAAGGAAAG 001600 001601 CTGTGTGACA CCTGGCCTTC CTCTATGTTC ATGGAGCTTC TTTGAGGCTA GAAGATTGAT TTTATCATCT AGACCTCTCT 001680 001681 GGCTAATACC TATTCTTCAA CCACATTAGT TACTCTGACA TAGGA |
Predicted Small Protein
Name | NONHSAT047468_smProtein_8:184 |
Length | 59 |
Molecular weight | 6220.8269 |
Aromaticity | 0.051724137931 |
Instability index | 49.1724137931 |
Isoelectric point | 4.96258544922 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.0489214704901 |
Amino acid sequence | MVKLKSSFTDLPKEKADGTEQVERRELGFVQPSGVTDGMSEQEARAWARGAAGPSEGP |
Secondary structure | LEEEEELLLLLLLLLLLLLEEEEEEEELEELLLLLLLLLLHHHHHHHHHHLLLLLLLL |
PRMN | - |
PiMo | - |