NONHSAT053202
Revision as of 17:30, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053202 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1605 nt |
Genomic location |
chr17-:34791545..34793149 |
Exon number |
1 |
Exons |
34791545..34793149 |
Genome context |
|
Sequence |
000001 CTGAATGTGC TGTTTGCCTC GGACATCAAA CATCTCACAG ACTGCCTGGA AGAAGGTGGA GCAGACTGGG GTTAATGGTC 000080
000081 AGCAGCAGCA GCATCCCCAC CACTGGGGCT ATCCCTTTTT AGGCCCTTAC CATGGGCCAA ACACTGAGCC GTGTGCTTCG 000160 000161 TGTAACTTCT AAGCACGCTT ACCTGATAGG GTGACAGCAA AGACTCGAAG AGGTGCCTGG GCTTGGCACA TAGTAGCTAT 000240 000241 TGCTACTATT ATGAATGTTG TTTTGTCTTT GTTTTTGTTT TGAGACAGGG CCTCACTCTG TTGCCCAGGT TGGAGTACAG 000320 000321 CAGTGCCATC ATAGCTCACT GAAGCCTCAA CCTCCCTGGG TTTGAGCAAT CCTCCCACCT CAGCCTCCCA AGTAGCTGAG 000400 000401 ACTACAGGTG TGCGCCACCA AGCCCAGCCA ATTGTTTGTA TTTTCAGTAG AGACTGGTTT TGCCAAGTCG CCCAGGCTGG 000480 000481 TTTCGAACTC TGGGGTTCAA GCAATCTGCC CACCTCAGCC TCCCAAAGTG CTGGCATTAC AGGCGTGTGC CACTGCGCCC 000560 000561 AGCCATTATG AATGTCAATA TTGACATGAT CTTGTATCCT TATGCCCACA CTGGGAGAGG TCTGATTGTC CCCATGTTCC 000640 000641 TGGTGTGGAA CCACATGGAA GAGGCCTATG TTATCCCAAC AGTGCAGAAG CACAGCCTGA GTCTCTTCTT TGGCTGAGCC 000720 000721 AAGGGCGTGC TGGAGAGGCC TGACAGAAGA AGGAGCGGCC CTTGTGACCA GTGCCCTTTT GGTTCACAAG GAACTTCTCC 000800 000801 TCTTGTTGAA GTGACTTGGC TGAGCTTGCT ACTTCTGCTT TGAGAGTCAA ATATCAGGAT CAAGACTTTA ATTATCCCCA 000880 000881 ATTTACAGAT GATGAAACCA TATTGGGCAG GAAAGAAAGT CACCCCAGGA GAGCAAGTTG GACCTGAGCA CTGGCTGAGG 000960 000961 ACAAAGGGGA ATGATAATTT GGGATGTAAC TTGTTAAGGG GTCTCACAAG TGTTCTTGTG ATCCAGGTGT CGAGAGGATA 001040 001041 CAGCAGAAAG GTTGCCAGGG AGATGAGGGT AGGGTACACC ACAAGAGTGG GAGAAATTAA AGAGAACACG CAACAAAGCC 001120 001121 TTGGGACACT GGGAGGGGGA TGGACCACCC AGTTTTGTGC TATGGGAGAA GAGAGCAAGA AAAGGAATCT GTGTTAAATC 001200 001201 CCGACAGCCT GCATGAGAAG CAAATGCCCT TCATTTTCTT CATCAGCGGC GAGACTGGCA TCCCTGCAGC TTTGGGAGAC 001280 001281 CATGCTAGTG TAGATGCCAG CTCACGCCAG CGGGCCTGAC TGGGAGACCT TGGGCTGGGG TTCTGGTCTG GGGCTCCTAG 001360 001361 GCCTGATGGG AGGAGAGTTC AGCCCCAGGT TTCCTGTACT TCAGCTCATA TCCACACAAT GGTAATTATT GAAATGAGAG 001440 001441 ACTCAAAAGA AGATGGAACG TGAACTTTTT TGTTGTCCCA TGTGGACACC TGTGTTCGGT TTCCAGTTCT ACCTCTTGCT 001520 001521 GTCTGTGTGT TCTTAAGTAA CTCACTTAAA CCTTTCTGAG TCTCATTTTC TTCATTTATA AAATAAAAGA CGTAACATTT 001600 001601 ATGTC |
Predicted Small Protein
Name | NONHSAT053202_smProtein_1139:1318 |
Length | 60 |
Molecular weight | 6570.2793 |
Aromaticity | 0.0677966101695 |
Instability index | 52.7525423729 |
Isoelectric point | 5.41510009766 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0331592096299 |
Amino acid sequence | MDHPVLCYGRREQEKESVLNPDSLHEKQMPFIFFISGETGIPAALGDHASVDASSRQRA |
Secondary structure | LLLLEELLLLLLHHHHLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |