NONHSAT055642

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT055642

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3414 nt

Genomic location

chr17+:70026957..70037438

Exon number

3

Exons

70026957..70026992,70033186..70033272,70034146..70037438

Genome context

Sequence
000001 CGCATCCCAG GAAGAAGGAG TTGGAGCTCC GTGATGCCAT TCAAAAACAG ATGAGATGGG GACAGATTTA ACCCAAAGGA 000080
000081 CATAGTTCAA CTCCTGGTCT TGACAGAGGA GAAGCCCTCA AAGATGGAGT CTCACTCTGT TGCCAGGCTA GAATACAATG 000160
000161 GCACGAACTT GGCTCACTGC AACCTCCGCC TCCTGGGTTC AAGAGATTCT CCTGCCTCAG AGTCCTGAGT TGCTGGGACT 000240
000241 ACGGGCACAC ACCATCATGC CCAGCTAATT TTTGTATTTT TAGTAGAGAC AGGGTTTCAC CATGTTGACC AGGATGGTCT 000320
000321 CGATCTCTTG ACCTCGTGAT CTGCCCACGT CGGCCTCCCA AAGTCCTGGG ATTACAGGCA TGAGCCAGTG CGCCTAGCAA 000400
000401 ACGACAGCTT TTTGAGCCTC TGTTTAACAA TCTCTTAAAC CTTATAGGTA GGCAGTTCTG AGACAGCTCC TAATCATCTC 000480
000481 CCCTCCTGGT ATTCAAGCCC TGATGGAATA CTCTCTTCTT CAATGTGAGC TGGACTTAGT GGTTTTCTTC TAATCCATTG 000560
000561 AATACACACA AGTGATGAGC TGTCATTTCC AAAATTAGTT CACACAAAGC TGTAACTTTT GTTTTGTTCA CAGCCTCTCT 000640
000641 CAATTGCCTT CTCAGCTTGT ATGCTTTGAA GAAGCAAGCT GCAGTGTTGG AGAGGCCCAT GTGGCAAGGA AATGAGGGTG 000720
000721 GCCTCCAGTC AATGGCTGGT GAGAAACTGA GACCTTCCTT CCAACAATTG TCAAGTAACT GAATACTCCC AACAATCATA 000800
000801 TGGGTTAGGT TAGAAGTGAA CCTTTCTCTA GTTGAGGTTT CAGATAAGAC CACAGATATT TATCTAACAC CTTGATTGCA 000880
000881 GGCTTATGAG AAACCTTGAA ATGAGAAGAC TAAGTAAAAC CATATCTGGA TTCCTGACTT ACAGAAACTG TGTGATGATA 000960
000961 AATGTGTGTT ATCTTAAGCC ACAAAGTTTT TGGGGTGATT TGTTCTACAG CAATTGATAA TGAATACTTC AACCTATAGT 001040
001041 GACAACTGGA TGTCTATTTA CTCATTTTCC CCACCAAAGT GTAAAGTTCC TACAAGGCAG AGGTTACAAC ATATTCATCC 001120
001121 TGCTACCTCT CATAGCCCAT AATATACAAC CTGGCCCATA AAACATGATT AATCAATGTT TGTTAAATTA ACATGTATTT 001200
001201 TGAGTTTCAT TGAAATCAGT TAGTTGAAGT GATAATAACA TTTAAATGTG CATGAGCAGT AGGACAAGGC AGATAGCTGG 001280
001281 TTAGGATAGA AAGTTTTTGA AAATTGTGAG GGGAAAAATT ATTTCTATTT GTACCCTGTT GTACCCAGCT TAGGTTTCAA 001360
001361 AAACTTTCAG GGGGTTTTTA TTCATTTACC AAAGACTTCA AAGTTGGTGC CTCCCCACCA CTCTAAAGAG GTCTTTGCCC 001440
001441 TTATTGACCC AACCATACTG ATTTGCCTGG TGCACAGTGG GAGCTATTAT AAGGAGAGGG GAGAAGAAGG AAATAGAAAC 001520
001521 AACTGTGAAA AAGGTTGAAA AAAATAGCGA AAAGGATAGA AAAAGAGCAG AGGAAAGAGA AGAAGTAGTC AACATCCAAC 001600
001601 CCAGATGCAG AGAAATGATT CAAAAGAAAA AGTCTGATTT TCCTGTCGGA AATATTTTTA AAAGGAGGTA GGCGTTTATC 001680
001681 AAAAAGGAAA AAAAAAAAAA AAGAATAACA GAGTTTGTCT TCCAAAGGAC CCAATACTCT TGGAATTCAA TGACCTAATT 001760
001761 CTGTGTATGG TTGCAGTGTG GAGATTGCCT CTTGTCTGAT CTCTACGGCA TTGAGACCTC TGATTTCTCA ACAGCACATG 001840
001841 CCACAGCACT ATCAGAAGTC AGGAATAAAG AACAGAGGGT GTGGGGGGCA GTCTAGATAT TATGCTCAGC AAACATATTT 001920
001921 TTAAATCAGT GTAAATTCTA TCTTGCTGGT TGCTTATCTT AGCAGTTAAA TCAACTTTTC GTTACTTTTG TAGACATTAT 002000
002001 ATAATATCTT CTCCCCGCAG CTCCAGCCAC CAGCTGTTAG TCAGCAGAAT GGGAGAGGGA CTGGGTCAGC TTAAGCTGAA 002080
002081 TAACTTCCAT GGTGACATTT GAGGGAACCA ATTCCCAGCC ACTGAACAAA CCTAAATGTT CTGCTATGGC CATAGAACCA 002160
002161 AATAGATCTT AACAAAGAAA CCTGAGAGCA TTCAAAGGTC AAAACAATTG GAGCTAGTTC CTTCAAGCTT AAATATGCTC 002240
002241 ATCTGTAAAG TGGGGACAAT AACTATATAT CTTATAGGGT TATTTTGAAG GCTAAATATG TGTAAAAGCC TCAGTCTACT 002320
002321 GAAAGGTTGC TCAACTGTAA CACTCTTTTC ATTTTGTGAG GGATCATTCT TTGTTGGAGG TTAGGGACAC TGTCTCGTGC 002400
002401 ATTACAGGAT GTTTAGCAAC ATCCTCAGCT TCTATCCATC AGATGTTAGC ACCCCCCCCA CGGACCACCA TCTTCTCCAT 002480
002481 CATCACCATC AAATATGTCT CCAGACATTT CCAAGTGTCC CCTGGGAGGC TAAAACTGCC CCTGGTTGAG AACCACTGTT 002560
002561 CTAGTACTTG GCATTGTTCC ATAAACATCA GATGATATTT TTATCATTAT AATTATTACT AAAGGCAACA TCACCCTGCA 002640
002641 ATGGAGACAG GTCTTGGTCT CACGGAATCC TGCAATAGTT GCTGCATTTC TGCATCTTTC TGAGAGTAAG GGTTGAAAAG 002720
002721 AGATAAGGTC AATTCATCTG ACAACAATCA ATGGGAAACC TACTGTCTCC GTAGAAATTC TTTTCATGGA AAGAAAAGGG 002800
002801 GCTACCATTT TGATCTGCTG CAGGAACTAG GTCTATTCCT CAGCCTCACA GTTTGCAAAA CGCTACAGAC TTTTCCATGG 002880
002881 GCATAAATTC TCCAGCTTTA GGGATTGCTG GTATAGTTGA CTCTTGAAGC TGCTCTTGGA TTTCCAAGGG TAGCACCATT 002960
002961 TTTTACCTGA GAAAAGAAGG AAAAAGATAT TCAAGAAGGA GAACTTTTCA ACAGAAGTTA CTCCATTTGC TGTTTTTGTG 003040
003041 GTTTTGTGCT TGTTTAGGTT TGCAAGTGTG TTTTCTGCCC AAATTGTTCT TGCATATTCT AACAGTGTTT GCTTTACGTG 003120
003121 TTTTGATGCC ACGCTGTTTT GAAGGTACAA ATGTTTTTCA TGGCATGTCT TGTGTTAAGT GTACAAACTG AGACGTGAAT 003200
003201 GTCAGTGACT GAATAGAGTA CAGTATTCCT CAAAGTTTGT AACTAAATAA ACCCTAAGAG AAAAGTGAAG CGAGATTTCT 003280
003281 GGAGGTCTGG AAGTGGCCAG CTGACAATAT ACATCTCTGT ATCTCCTATT TTTATCTTTA TGCTAAATGC AAATTTTACT 003360
003361 TTCTGTGCTA AAATAATGTT TCATTAGTTT CAAGGTAAAA ATGTGTAAAT AGAC
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Predicted Small Protein

Name NONHSAT055642_smProtein_2408:2548
Length 47
Molecular weight 5222.8246
Aromaticity 0.108695652174
Instability index 71.7436956522
Isoelectric point 6.24249267578
Runs 7
Runs residual 0.00918737060041
Runs probability 0.0291089408737
Amino acid sequence MFSNILSFYPSDVSTPPTDHHLLHHHHQICLQTFPSVPWEAKTAPG
Secondary structure LLLLEELLLLLLLLLLLLLLHHHLLLLLEEEELLLLLLLLLLLLLL
PRMN -
PiMo -