NONHSAT055642
Revision as of 17:39, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055642 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3414 nt |
Genomic location |
chr17+:70026957..70037438 |
Exon number |
3 |
Exons |
70026957..70026992,70033186..70033272,70034146..70037438 |
Genome context |
|
Sequence |
000001 CGCATCCCAG GAAGAAGGAG TTGGAGCTCC GTGATGCCAT TCAAAAACAG ATGAGATGGG GACAGATTTA ACCCAAAGGA 000080
000081 CATAGTTCAA CTCCTGGTCT TGACAGAGGA GAAGCCCTCA AAGATGGAGT CTCACTCTGT TGCCAGGCTA GAATACAATG 000160 000161 GCACGAACTT GGCTCACTGC AACCTCCGCC TCCTGGGTTC AAGAGATTCT CCTGCCTCAG AGTCCTGAGT TGCTGGGACT 000240 000241 ACGGGCACAC ACCATCATGC CCAGCTAATT TTTGTATTTT TAGTAGAGAC AGGGTTTCAC CATGTTGACC AGGATGGTCT 000320 000321 CGATCTCTTG ACCTCGTGAT CTGCCCACGT CGGCCTCCCA AAGTCCTGGG ATTACAGGCA TGAGCCAGTG CGCCTAGCAA 000400 000401 ACGACAGCTT TTTGAGCCTC TGTTTAACAA TCTCTTAAAC CTTATAGGTA GGCAGTTCTG AGACAGCTCC TAATCATCTC 000480 000481 CCCTCCTGGT ATTCAAGCCC TGATGGAATA CTCTCTTCTT CAATGTGAGC TGGACTTAGT GGTTTTCTTC TAATCCATTG 000560 000561 AATACACACA AGTGATGAGC TGTCATTTCC AAAATTAGTT CACACAAAGC TGTAACTTTT GTTTTGTTCA CAGCCTCTCT 000640 000641 CAATTGCCTT CTCAGCTTGT ATGCTTTGAA GAAGCAAGCT GCAGTGTTGG AGAGGCCCAT GTGGCAAGGA AATGAGGGTG 000720 000721 GCCTCCAGTC AATGGCTGGT GAGAAACTGA GACCTTCCTT CCAACAATTG TCAAGTAACT GAATACTCCC AACAATCATA 000800 000801 TGGGTTAGGT TAGAAGTGAA CCTTTCTCTA GTTGAGGTTT CAGATAAGAC CACAGATATT TATCTAACAC CTTGATTGCA 000880 000881 GGCTTATGAG AAACCTTGAA ATGAGAAGAC TAAGTAAAAC CATATCTGGA TTCCTGACTT ACAGAAACTG TGTGATGATA 000960 000961 AATGTGTGTT ATCTTAAGCC ACAAAGTTTT TGGGGTGATT TGTTCTACAG CAATTGATAA TGAATACTTC AACCTATAGT 001040 001041 GACAACTGGA TGTCTATTTA CTCATTTTCC CCACCAAAGT GTAAAGTTCC TACAAGGCAG AGGTTACAAC ATATTCATCC 001120 001121 TGCTACCTCT CATAGCCCAT AATATACAAC CTGGCCCATA AAACATGATT AATCAATGTT TGTTAAATTA ACATGTATTT 001200 001201 TGAGTTTCAT TGAAATCAGT TAGTTGAAGT GATAATAACA TTTAAATGTG CATGAGCAGT AGGACAAGGC AGATAGCTGG 001280 001281 TTAGGATAGA AAGTTTTTGA AAATTGTGAG GGGAAAAATT ATTTCTATTT GTACCCTGTT GTACCCAGCT TAGGTTTCAA 001360 001361 AAACTTTCAG GGGGTTTTTA TTCATTTACC AAAGACTTCA AAGTTGGTGC CTCCCCACCA CTCTAAAGAG GTCTTTGCCC 001440 001441 TTATTGACCC AACCATACTG ATTTGCCTGG TGCACAGTGG GAGCTATTAT AAGGAGAGGG GAGAAGAAGG AAATAGAAAC 001520 001521 AACTGTGAAA AAGGTTGAAA AAAATAGCGA AAAGGATAGA AAAAGAGCAG AGGAAAGAGA AGAAGTAGTC AACATCCAAC 001600 001601 CCAGATGCAG AGAAATGATT CAAAAGAAAA AGTCTGATTT TCCTGTCGGA AATATTTTTA AAAGGAGGTA GGCGTTTATC 001680 001681 AAAAAGGAAA AAAAAAAAAA AAGAATAACA GAGTTTGTCT TCCAAAGGAC CCAATACTCT TGGAATTCAA TGACCTAATT 001760 001761 CTGTGTATGG TTGCAGTGTG GAGATTGCCT CTTGTCTGAT CTCTACGGCA TTGAGACCTC TGATTTCTCA ACAGCACATG 001840 001841 CCACAGCACT ATCAGAAGTC AGGAATAAAG AACAGAGGGT GTGGGGGGCA GTCTAGATAT TATGCTCAGC AAACATATTT 001920 001921 TTAAATCAGT GTAAATTCTA TCTTGCTGGT TGCTTATCTT AGCAGTTAAA TCAACTTTTC GTTACTTTTG TAGACATTAT 002000 002001 ATAATATCTT CTCCCCGCAG CTCCAGCCAC CAGCTGTTAG TCAGCAGAAT GGGAGAGGGA CTGGGTCAGC TTAAGCTGAA 002080 002081 TAACTTCCAT GGTGACATTT GAGGGAACCA ATTCCCAGCC ACTGAACAAA CCTAAATGTT CTGCTATGGC CATAGAACCA 002160 002161 AATAGATCTT AACAAAGAAA CCTGAGAGCA TTCAAAGGTC AAAACAATTG GAGCTAGTTC CTTCAAGCTT AAATATGCTC 002240 002241 ATCTGTAAAG TGGGGACAAT AACTATATAT CTTATAGGGT TATTTTGAAG GCTAAATATG TGTAAAAGCC TCAGTCTACT 002320 002321 GAAAGGTTGC TCAACTGTAA CACTCTTTTC ATTTTGTGAG GGATCATTCT TTGTTGGAGG TTAGGGACAC TGTCTCGTGC 002400 002401 ATTACAGGAT GTTTAGCAAC ATCCTCAGCT TCTATCCATC AGATGTTAGC ACCCCCCCCA CGGACCACCA TCTTCTCCAT 002480 002481 CATCACCATC AAATATGTCT CCAGACATTT CCAAGTGTCC CCTGGGAGGC TAAAACTGCC CCTGGTTGAG AACCACTGTT 002560 002561 CTAGTACTTG GCATTGTTCC ATAAACATCA GATGATATTT TTATCATTAT AATTATTACT AAAGGCAACA TCACCCTGCA 002640 002641 ATGGAGACAG GTCTTGGTCT CACGGAATCC TGCAATAGTT GCTGCATTTC TGCATCTTTC TGAGAGTAAG GGTTGAAAAG 002720 002721 AGATAAGGTC AATTCATCTG ACAACAATCA ATGGGAAACC TACTGTCTCC GTAGAAATTC TTTTCATGGA AAGAAAAGGG 002800 002801 GCTACCATTT TGATCTGCTG CAGGAACTAG GTCTATTCCT CAGCCTCACA GTTTGCAAAA CGCTACAGAC TTTTCCATGG 002880 002881 GCATAAATTC TCCAGCTTTA GGGATTGCTG GTATAGTTGA CTCTTGAAGC TGCTCTTGGA TTTCCAAGGG TAGCACCATT 002960 002961 TTTTACCTGA GAAAAGAAGG AAAAAGATAT TCAAGAAGGA GAACTTTTCA ACAGAAGTTA CTCCATTTGC TGTTTTTGTG 003040 003041 GTTTTGTGCT TGTTTAGGTT TGCAAGTGTG TTTTCTGCCC AAATTGTTCT TGCATATTCT AACAGTGTTT GCTTTACGTG 003120 003121 TTTTGATGCC ACGCTGTTTT GAAGGTACAA ATGTTTTTCA TGGCATGTCT TGTGTTAAGT GTACAAACTG AGACGTGAAT 003200 003201 GTCAGTGACT GAATAGAGTA CAGTATTCCT CAAAGTTTGT AACTAAATAA ACCCTAAGAG AAAAGTGAAG CGAGATTTCT 003280 003281 GGAGGTCTGG AAGTGGCCAG CTGACAATAT ACATCTCTGT ATCTCCTATT TTTATCTTTA TGCTAAATGC AAATTTTACT 003360 003361 TTCTGTGCTA AAATAATGTT TCATTAGTTT CAAGGTAAAA ATGTGTAAAT AGAC |
Predicted Small Protein
Name | NONHSAT055642_smProtein_2408:2548 |
Length | 47 |
Molecular weight | 5222.8246 |
Aromaticity | 0.108695652174 |
Instability index | 71.7436956522 |
Isoelectric point | 6.24249267578 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.0291089408737 |
Amino acid sequence | MFSNILSFYPSDVSTPPTDHHLLHHHHQICLQTFPSVPWEAKTAPG |
Secondary structure | LLLLEELLLLLLLLLLLLLLHHHLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |