NONHSAT055699
Revision as of 17:39, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055699 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3053 nt |
Genomic location |
chr17+:70419592..70424962 |
Exon number |
4 |
Exons |
70419592..70419811,70420001..70420435,70420484..70422323,70424405..70424962 |
Genome context |
|
Sequence |
000001 GAAGTATGTG AAATCCACAC AAGGCAGTAA CATTGTAATA TCACTGTTTA AAACTTTGGC TCCAGGGACC TGGCCATGAG 000080
000081 GCTACCATCT TGCTCCATCT CCCTGGGCCA TTGGTCTGGG AGCGGAAGAA TGCAAGGCAT TGGGGAGGAA AGTGTCCATG 000160 000161 TTGCCCAGGA GCCTGGCGGG ATCACTCAGA AACACACTCA ACCTTGGGAG AAACACACAG GTTCTGTTTT CAGGTTACGT 000240 000241 GCAATCACGG GACAGCTGCT AATCACCACC AAGACGGGGC CGTCCCAGAA GCATTCTTAG AAAGACACGC TGGTTCTGCG 000320 000321 AGCTCTGAAG CACCCTTAGC CTGTCCTGCC TGGAGGATCA TTGTGGCTGC AGGACGAGAA AGACAAGAGG AAAGACGGCC 000400 000401 GACCCATTCA TTCCTGCCGT TGTCAAGTTG TCCTTTCTTG GAGGGAGGAG GAAGACGGGA GGGTGCTAAG AGGCTGCGAG 000480 000481 ACAACAAGGG GACCCCTCAA AGAGCATCAG GGAGACCACG AAGAATGATC TCAAGCAGTA TTAGCTGCTC CATGGCATGA 000560 000561 TAATGTCCCT GTTGGGTGTT CCCTGCACTC TGTACCCCTC ATACCCTAAC TTCATCAGAA CAGGAGGAAG GGGGCATTTG 000640 000641 CTGTCTCTCT CTTCCTTTTT TTTTTTACTG CTGGGGCTGC AATCTGCCAG TGTGAACCCT GGTGGCTCTG CAGGCAGCAG 000720 000721 GGTGAGGAGA GTGACCCTCA TATGAAGCCA CGACCCCAAT GCAAGAGGCT ATCCTGAATC TGGGAGTCAC GGTTGTTCAG 000800 000801 AATCAGTCCC TGAGATGTGG CACCGTGGCG TTTGACATTA TCACCACCAT CGATGTCATT CTATGGTAAC GTATGTGTGC 000880 000881 CATTGTGTGC CTGGGACACA AACAGGCACT TTCGATACCC CTCCTGCTTG GACCCTTCCC CTGCCATCCC CTCCTCCCAC 000960 000961 TGGCCGCCCT GTTGCTCTCA GCTTCCCTGT AAAGAGGCCT TTTTCACAAT GAGTCGGATC ACAGCATGCT TTGCTCAAAA 001040 001041 CCCTGCCTGG CTCCCAGGTC CCTCAGAGGG AAGGCCCAAG GCCTCTGGGC CTGACCTGGT CTGACGGTCA CCGCCCCTCT 001120 001121 CGGCGCTCAG CACTTACTGA GCTTGATTCT CAAGCACACC ATATACTCCT GCCTGCTTTG GGCCCCAATG TACCTGCTCC 001200 001201 CTCTGTCCCA AAGGCTCTTC CCCAAAACAT CCTCCTACAA GTCTGTGCTC AAATGTCACC TTCTCCATTC AGCCCTACAA 001280 001281 CCTGCCCTCC ACCTCTCTCC CTGCACTGCA CACTGGAGCT GCCTTTCCTG CCTCTGTGTT TTTTTTTTCG ATAACACTAT 001360 001361 CACCTCCTTA CATACTAGAT AATTTACATA CTAACTATTT TTTACTGTTT AGCCTGCCCC ACCTTGACAG CCAGTGTGGA 001440 001441 TGCAGGACAG GAAAGACAAA AGAGGAATGA TGGCTGACCC AATGCTTCTC ATCTTTCCTG GCCCCATGAT GTGGTTTGGC 001520 001521 TCTGTCCCTA CCCAAATCTC ATCTTGAATT GTAGCTCCTA TAATTCCCAG TGTTGTGGGA GAGACCTGGT GGGAGTTAAT 001600 001601 TGAATCATGG GGACAGTTTC CCCCATCCTG TTCTCATGGT AGTGAATAAG CCTCACGAGA TCTGAAGGTT TTATAAGGGG 001680 001681 AAATCCCTTT TGCTTGGTTC TCATTCTCTA TTGCCTGCCC CCACATAAGA CATGCCTTTC ACCTTCCGCC ATGATTGTGA 001760 001761 GGCCTCCCCA GCCACGCGGA GGAGGTATGT CTGTATCAGC AGACATATGT CTCAGGTATG TCTGTATCAG CAGCATGAAA 001840 001841 ATGGACTAAT ATACCCCATT AGAAGCCAAG CTCCATGCCA GCAGGACAGA GCCTGTTTTG TTCAGTGTCT GTTCTCTGCC 001920 001921 TAGAGCAGTG CCAGCAGTCC CGTAAATATC TATTAGATGA GTGAATGAAT GAATGAACCG ATCGATGAAC AAGTGAAGGG 002000 002001 TGGAATTACT GCCACTCATG GGGAGGGGGC TATGCATCTC ATGGAATGAG CTGGTCTTCA GGGTGGGGTT CCCTGGGGAG 002080 002081 TGGGGGAGAG GGCTGGCAAA GGCAGAAGGT GCTGCTTCCA GAAAGGCAGT GCCCGAAGTT TGCCTGGAAA TCCCCTTGGC 002160 002161 ATCACTCATT AACTAACCCC CACCCCAATA CACATCCAAA CCCAAACAGT AGCTGAAGAG TAACTTCAAC CATAGACTCT 002240 002241 CTTTCCAGGC CCACGCTCCC ACCGGTGAGT GCATGTAGTC ATCTGGGCAC CTACCGTGTG CTCCTTGGAT CCCAGGATGA 002320 002321 GCAGTGAAGA AAGGATGGCG GGGGATGAAA GAGATCCCCT CCCACCCTCA TCCCACTCTC AAGGCTCTAG CTGGAAGGCA 002400 002401 GAGGCAACAC TGCAGATGAA GTTCTGAAAG TGAGATGGTG GGCAGGTAAA GGAGCTGCCA GCCCCATGGT GCCATGGCTG 002480 002481 TGGGGTTTTA AGCAGCACCC ACCGAGTCAG CCAGAAACCT CTGATTCCAC CTAGAAAAAT AAGGGAAGAG TTACACCAGG 002560 002561 AAGCAAGATA ATGAAACTCA TCTTGAAGCT TAAACGTGGA CGGAGTGGTT CCTCAGTGCC AGACAGCTCC CCGCAAGCAC 002640 002641 ATAGGAGTTT AATAGCTGTT TATTCTTCCA TATAGACTAA AACTACATTC ATCAGAAAAA GGGGAGTAAT TCATTTCCTA 002720 002721 TCCCAATTAT GGATATAGCA GACTGAAGAA TATTTTCAAA GAAATACAGT TTATTATGAT CACAAACTTG ACCTAGAGTA 002800 002801 AACTAAGATG TAAATGGATA TTTACACTGG ATAGTAATTG TTTTCAAGTT ATAAAAATAC TTAAGTTTAC AATGGACATT 002880 002881 TACTACAAAA CAACCTAATG CCACAGTGCC AAGTTGTTCT GTTTTTATTG GGTCTTTTAC TCCTATGATC CTATTTCTAA 002960 002961 ATGTTTATAT GTTCTAATTT GTGATATGTC TGAATTCACT GAATGGGATG ACATATGAGG AACATCTAGT GCCATGTCTG 003040 003041 GTCCCTATTA AGC |
Predicted Small Protein
Name | NONHSAT055699_smProtein_1187:1381 |
Length | 65 |
Molecular weight | 7307.5886 |
Aromaticity | 0.109375 |
Instability index | 63.9171875 |
Isoelectric point | 9.01495361328 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0627612907025 |
Amino acid sequence | MYLLPLSQRLFPKTSSYKSVLKCHLLHSALQPALHLSPCTAHWSCLSCLCVFFFDNTITS LHTR |
Secondary structure | LLLLLHHHHLLLLLLLHHHHHHHHHHHHHLLHHHLLLLLLLLHHHHHHHEEEEELLLLHH HLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL LLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiii iiii |