NONHSAT055699

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT055699

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3053 nt

Genomic location

chr17+:70419592..70424962

Exon number

4

Exons

70419592..70419811,70420001..70420435,70420484..70422323,70424405..70424962

Genome context

Sequence
000001 GAAGTATGTG AAATCCACAC AAGGCAGTAA CATTGTAATA TCACTGTTTA AAACTTTGGC TCCAGGGACC TGGCCATGAG 000080
000081 GCTACCATCT TGCTCCATCT CCCTGGGCCA TTGGTCTGGG AGCGGAAGAA TGCAAGGCAT TGGGGAGGAA AGTGTCCATG 000160
000161 TTGCCCAGGA GCCTGGCGGG ATCACTCAGA AACACACTCA ACCTTGGGAG AAACACACAG GTTCTGTTTT CAGGTTACGT 000240
000241 GCAATCACGG GACAGCTGCT AATCACCACC AAGACGGGGC CGTCCCAGAA GCATTCTTAG AAAGACACGC TGGTTCTGCG 000320
000321 AGCTCTGAAG CACCCTTAGC CTGTCCTGCC TGGAGGATCA TTGTGGCTGC AGGACGAGAA AGACAAGAGG AAAGACGGCC 000400
000401 GACCCATTCA TTCCTGCCGT TGTCAAGTTG TCCTTTCTTG GAGGGAGGAG GAAGACGGGA GGGTGCTAAG AGGCTGCGAG 000480
000481 ACAACAAGGG GACCCCTCAA AGAGCATCAG GGAGACCACG AAGAATGATC TCAAGCAGTA TTAGCTGCTC CATGGCATGA 000560
000561 TAATGTCCCT GTTGGGTGTT CCCTGCACTC TGTACCCCTC ATACCCTAAC TTCATCAGAA CAGGAGGAAG GGGGCATTTG 000640
000641 CTGTCTCTCT CTTCCTTTTT TTTTTTACTG CTGGGGCTGC AATCTGCCAG TGTGAACCCT GGTGGCTCTG CAGGCAGCAG 000720
000721 GGTGAGGAGA GTGACCCTCA TATGAAGCCA CGACCCCAAT GCAAGAGGCT ATCCTGAATC TGGGAGTCAC GGTTGTTCAG 000800
000801 AATCAGTCCC TGAGATGTGG CACCGTGGCG TTTGACATTA TCACCACCAT CGATGTCATT CTATGGTAAC GTATGTGTGC 000880
000881 CATTGTGTGC CTGGGACACA AACAGGCACT TTCGATACCC CTCCTGCTTG GACCCTTCCC CTGCCATCCC CTCCTCCCAC 000960
000961 TGGCCGCCCT GTTGCTCTCA GCTTCCCTGT AAAGAGGCCT TTTTCACAAT GAGTCGGATC ACAGCATGCT TTGCTCAAAA 001040
001041 CCCTGCCTGG CTCCCAGGTC CCTCAGAGGG AAGGCCCAAG GCCTCTGGGC CTGACCTGGT CTGACGGTCA CCGCCCCTCT 001120
001121 CGGCGCTCAG CACTTACTGA GCTTGATTCT CAAGCACACC ATATACTCCT GCCTGCTTTG GGCCCCAATG TACCTGCTCC 001200
001201 CTCTGTCCCA AAGGCTCTTC CCCAAAACAT CCTCCTACAA GTCTGTGCTC AAATGTCACC TTCTCCATTC AGCCCTACAA 001280
001281 CCTGCCCTCC ACCTCTCTCC CTGCACTGCA CACTGGAGCT GCCTTTCCTG CCTCTGTGTT TTTTTTTTCG ATAACACTAT 001360
001361 CACCTCCTTA CATACTAGAT AATTTACATA CTAACTATTT TTTACTGTTT AGCCTGCCCC ACCTTGACAG CCAGTGTGGA 001440
001441 TGCAGGACAG GAAAGACAAA AGAGGAATGA TGGCTGACCC AATGCTTCTC ATCTTTCCTG GCCCCATGAT GTGGTTTGGC 001520
001521 TCTGTCCCTA CCCAAATCTC ATCTTGAATT GTAGCTCCTA TAATTCCCAG TGTTGTGGGA GAGACCTGGT GGGAGTTAAT 001600
001601 TGAATCATGG GGACAGTTTC CCCCATCCTG TTCTCATGGT AGTGAATAAG CCTCACGAGA TCTGAAGGTT TTATAAGGGG 001680
001681 AAATCCCTTT TGCTTGGTTC TCATTCTCTA TTGCCTGCCC CCACATAAGA CATGCCTTTC ACCTTCCGCC ATGATTGTGA 001760
001761 GGCCTCCCCA GCCACGCGGA GGAGGTATGT CTGTATCAGC AGACATATGT CTCAGGTATG TCTGTATCAG CAGCATGAAA 001840
001841 ATGGACTAAT ATACCCCATT AGAAGCCAAG CTCCATGCCA GCAGGACAGA GCCTGTTTTG TTCAGTGTCT GTTCTCTGCC 001920
001921 TAGAGCAGTG CCAGCAGTCC CGTAAATATC TATTAGATGA GTGAATGAAT GAATGAACCG ATCGATGAAC AAGTGAAGGG 002000
002001 TGGAATTACT GCCACTCATG GGGAGGGGGC TATGCATCTC ATGGAATGAG CTGGTCTTCA GGGTGGGGTT CCCTGGGGAG 002080
002081 TGGGGGAGAG GGCTGGCAAA GGCAGAAGGT GCTGCTTCCA GAAAGGCAGT GCCCGAAGTT TGCCTGGAAA TCCCCTTGGC 002160
002161 ATCACTCATT AACTAACCCC CACCCCAATA CACATCCAAA CCCAAACAGT AGCTGAAGAG TAACTTCAAC CATAGACTCT 002240
002241 CTTTCCAGGC CCACGCTCCC ACCGGTGAGT GCATGTAGTC ATCTGGGCAC CTACCGTGTG CTCCTTGGAT CCCAGGATGA 002320
002321 GCAGTGAAGA AAGGATGGCG GGGGATGAAA GAGATCCCCT CCCACCCTCA TCCCACTCTC AAGGCTCTAG CTGGAAGGCA 002400
002401 GAGGCAACAC TGCAGATGAA GTTCTGAAAG TGAGATGGTG GGCAGGTAAA GGAGCTGCCA GCCCCATGGT GCCATGGCTG 002480
002481 TGGGGTTTTA AGCAGCACCC ACCGAGTCAG CCAGAAACCT CTGATTCCAC CTAGAAAAAT AAGGGAAGAG TTACACCAGG 002560
002561 AAGCAAGATA ATGAAACTCA TCTTGAAGCT TAAACGTGGA CGGAGTGGTT CCTCAGTGCC AGACAGCTCC CCGCAAGCAC 002640
002641 ATAGGAGTTT AATAGCTGTT TATTCTTCCA TATAGACTAA AACTACATTC ATCAGAAAAA GGGGAGTAAT TCATTTCCTA 002720
002721 TCCCAATTAT GGATATAGCA GACTGAAGAA TATTTTCAAA GAAATACAGT TTATTATGAT CACAAACTTG ACCTAGAGTA 002800
002801 AACTAAGATG TAAATGGATA TTTACACTGG ATAGTAATTG TTTTCAAGTT ATAAAAATAC TTAAGTTTAC AATGGACATT 002880
002881 TACTACAAAA CAACCTAATG CCACAGTGCC AAGTTGTTCT GTTTTTATTG GGTCTTTTAC TCCTATGATC CTATTTCTAA 002960
002961 ATGTTTATAT GTTCTAATTT GTGATATGTC TGAATTCACT GAATGGGATG ACATATGAGG AACATCTAGT GCCATGTCTG 003040
003041 GTCCCTATTA AGC
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Predicted Small Protein

Name NONHSAT055699_smProtein_1187:1381
Length 65
Molecular weight 7307.5886
Aromaticity 0.109375
Instability index 63.9171875
Isoelectric point 9.01495361328
Runs 12
Runs residual 0.03890625
Runs probability 0.0627612907025
Amino acid sequence MYLLPLSQRLFPKTSSYKSVLKCHLLHSALQPALHLSPCTAHWSCLSCLCVFFFDNTITS
LHTR
Secondary structure LLLLLHHHHLLLLLLLHHHHHHHHHHHHHLLHHHLLLLLLLLHHHHHHHEEEEELLLLHH
HLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
LLLL
PiMo ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiii
iiii