NONHSAT056405
Revision as of 17:41, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056405 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
6185 nt |
Genomic location |
chr17-:78440635..78448592 |
Exon number |
2 |
Exons |
78440635..78443998,78445780..78448592 |
Genome context |
|
Sequence |
000001 GGCGGAGCAA GGCCACGTGA CCCTGCTCAG ACCGCAAAAT GTGCCGGACA GATTTAAACA GTGCCATCTT AAGGCTTGTT 000080
000081 ATGTAACTGA AAAACAGATC AGAAGGAAGG ACCTCAGGAG GGAGGGAGAG GGAAGGAGCG GAGATTGGGG AATGAAGGAC 000160 000161 ACCCGGAGAA AGGCCAGGGG CTGGGCCCCT CCCTATCCCC CACTGCAGGC CTCAATGGGT TGGGGTAGCC GCTGGGGTGC 000240 000241 TGCACTGAGG GGGCCTGCCC TGCTCCGCTC CCTGCCAGTT GGTTTAGAGG AGGGGGTGGT TGCTGACCGG GCAGGATGTC 000320 000321 TTCTAGAAAT AATTTTTGGC CTGGGGAACT GGTTTCTTTC TGGGCTTCCT GGCAGGACCA CGGCTGCTCA CCCAGGGATT 000400 000401 GACCAAGGGG TGTGTGTTCC TGGGCTCTGG GCCTGCTACT GTGCCCATTG CTGGCCAGGA ATGTTTTGCC TGGAGTCAGT 000480 000481 CACACCATAC CCAGGGTGCC ACAGTATATA GATGGGCTAT GGGGGTTGGC GCTTACGGGA GAAGTGGCCG GTGGGGAGGG 000560 000561 AGAAGGTGGG CCTTGTGGAA AGGGAGGCCA CCAGGCCTGG AACCTGAGCT GTGAGGACAC TTACTCACCT GAGAGTGTGG 000640 000641 CGGCATCCTA GAGCAGTCAC CTTGGGGAGC CCTGGCGCCC AGAGTACTCC CAGCTCCTTG CTGCCCTGCC CTCTCAGCAG 000720 000721 AGCTCCAGGC AGAGTCCCTG CTCCAAGGAA GGGCCTTGGA GGTGGGGAGC TGCCCAGCCT CACACCCAAG AGGCATTGGT 000800 000801 GGGTCAGAGG CACATCTGGC CTGGAGGGAA GTGTGTGGGC ACCAGGGCCT GGCTGTCGGG TGGGGAGAGG CAGGAGCAGA 000880 000881 GCCTGGGATT GAGCGAGGAG AGGCTCTGAG CCCCGCCCCA TCCTGGAATC AGGTCGGTTA CTCTCAGGGT AGCTAGCCTC 000960 000961 GTTCCTCCTC TGCAGCCACC CCTGCTCCTT GGGTTGACTT GGCTTGGCGG CTGTCCCCAT TCCCTTCTCA TGCCCACCAC 001040 001041 GCAGCCCAGT GTTGATGCAG CAGCCCACCA GGCACTGCCC CCCACCCCCA TCTCCCCGAG GATGCCAGCA CATGGGCGTG 001120 001121 ACAGCAGGCC AGACCTGGAG CATGAAGAGC TTGGGTCAGC TCTTTACAGA CTGGCCCTGT GCCTTGGGGC AAAGTACTTG 001200 001201 ACCTGGGAAG CTACCCGCTC TGCGTCTCCA GAATGGAGAC CGGAGCCTGC CCTGGCCACG CATCACAGAG CTTGGTGGGG 001280 001281 ACCGAACTCA ACTCAGACAC CGATAAGCAC TTCACGCAGG TGCAGATGTC AGGACTGTGT CTTCCGCAGG TCAGAAAGAC 001360 001361 AACCGCCCTG GAGACAAGTT CCAGCTCACA TTCCCACTGC GGACCAACTA TATGTATGCC AAGGTGAAGA AGAGCCTGCC 001440 001441 AGAGATGTAC GCCTCCACTG TCTGCATGTG GCTCAAGTCC AGCGCCACGC CAGGTGTGGG CACGCCCTTC TCCTACGCTG 001520 001521 TGCCCGGCCA GGCCAACGAG CTGGTCCTCA TTGAGTGGGG CAACAACCCC ATGGTGATCC TCATCAATGA CAAGGTAGAG 001600 001601 CAGCCCCCGG GCTCACAGGG CGGCAGGGCG AGGCCCCAGG GCCCCAGCTC ATGTTGCATG CTGAGACAGG GCTATGGTGG 001680 001681 CCTCAGATGT TGATGGGGCC CCAAGGAAAG TGTTTGCCAG GTGGGACTGA GGGAGGAGGA GGGTGAAGAC CAGGAGAAGT 001760 001761 GGTAGGAGCC CCCTCACCTG TACTGGGAGA GCAGGGAGAG CTGGACCTTC CCGGATGCCT CCTGGGGTGG GTACGGGAGA 001840 001841 TGACGGAGAA CGAGCCATGG GGCCTGGCCC TGCCCGATGA TGTGATCTGG ACTCCTCCAC CAGCTGGCCT TGGAACTGGC 001920 001921 TTTGCCCCTC CATAGCAGGG ACCCAGAGAT GCTCTAGCGG GGTGAGGGGT CCTTAGAGAT TTTTCCTGAG TCCAAGTCTA 002000 002001 TCCCACTCAG CCCCCTAACT CTCGGGAGGA GGACAGGTCT GTGTGATCCC TTGGAACAGG ACAGCACAGG CAGCCTTTCC 002080 002081 CTCTAGTGAA CATTCTCCAT CCTCCCCTGT TAGCTATGGA ACTAGCTGCC AGCTTTCAAA CTGTCTCAAG TCCAGGCCAG 002160 002161 CAGTGGTAGT CAATGGCTAA AACCTGGGCT GGGAAGTGGA TTCCACGCCC TTGTTCCTGT TGCTCTTCCC CACAAAGGGC 002240 002241 TGTGCCATTC TGGGCCCCCT TTCCCCAAGC GGAAAGGGTG TGAAGTTTCT TTCCTCACTG TCTGCTGGAC CATCATCCTC 002320 002321 CCGACCTGGA ATGGCAGTGG GAGAGTGAAA TTCCAGGTTG GAGGCTGGTC TGAGCTTTAA AAGGCATCGT GCTCCATGAC 002400 002401 ATCTCTCAGA TCCTCGGCAA AAGCTTGCCG TGTTGTAGAG TGAGAGGGTG TAACAGCTAG AGATGGGACA TCGGAAGAGA 002480 002481 GAGGAGAGGC CAGCAAGGAG GCTGCACAGA TGTCGCACGG AGCCTTGAGA GGCAGCAGTG AACTCAGACA CCAGGGACGG 002560 002561 CTCTCCCTGG TGTAGACTAG GGCTTGTTGT GTAGACTAGC AAAGAGGGAG GAGGGTGAGT AGGAGTGAAG AGACTGCACA 002640 002641 CCCACATGGC CCTTGGGGGT TCCCTCGGTA GAGCCTTACA TTTCCTGTGT GATTCTGTGC CCCACGCCCA GGCGGGGCTG 002720 002721 ACAGACGCTG AAGTCTGGGG CAGTAGGTGC TGTGAGAATT CAGTAATAGT TATTGACATT TACTTTGCAA GTAGAGATAG 002800 002801 GAACAACTGA GGCAGTGAAC TGTCTCTGAA GGGTGAAGGC AGGCCGTCCT GGGATGGTAC CCTGTGCTCT CCCGTGGAGG 002880 002881 AGAGGGGATG GCTGAGGACA CTGGCCCTTA CCCCAGGGCC AGACAGCATC CATCCCTGCT GTTTGCATCT GAGAGCAGCA 002960 002961 TGGGGCCTGG GAGGTCGGCC TGTGTGCCCA GCTCAGCTAG CTCTGCCCCA GGACGGCCCT GCCCTCGACA ATCCCACATC 003040 003041 CTCAGATCCT GCAAGGCTGG GGTCTGCCCC TCCCTTCTCA CCTCTGGAGC TGTGCTGCAC TGCTTCAGCC CAGAGGGCCC 003120 003121 TGAGAGAGGA GCGTGCCACC CACAGCCCGG GAAGCCGGGC CCCAGCACCC CTCTCCTTTG GCCTCCGGCA GTGCAGACCA 003200 003201 GAGGGGACCT TTTAAGGAAA GAAGCCGTGT TTCGATGAAG ACCTGGCCAC ATGGGGCCAC TGGGACTTCA ACCCAGCCCA 003280 003281 TCGGTGGGAA GGTCCTTTTT GGGGGCCTTT GACAGCCATA TCCCTCCCAG CACACCAGGC GCCAGGTGAG CTGGTTCAGA 003360 003361 CCCCTCCAGG GGTACTCCAG AGACCTCACG TGTGGAGCCA GGCCTGGCCA GGGCAGGGGC CTGAAACCCA CTCCCCCATC 003440 003441 TCATGGGGCT CACGGCCTAC AGCAGCCCAC AAGCTGCCAC TGGCCGGCGA CACTGACACC TGAGCAGTGT CCAGAACCTT 003520 003521 TTTGCCTTTT TTTGTTCCCC GTGAAAAGCA ACATGGACAT TTCCTTCTAG TCCTTCCAAG GAGGGGAGAG AAGTGTATGT 003600 003601 GCATTTGTGT GTGTGTGTGT GTGTTGTGTG TGTGTGTGCG CTAAGTGAGA AAGAGAGCAG GCTCGGGAGG CCCTGCCCAG 003680 003681 GGTAGGAGGA GCTTCCTGCT TTGCACCATC TGGTGGTCGC ACGCCCTGAG GGCACCCCGA CTCTGTCTCC AGGAGTCTCA 003760 003761 TCAGCAAACC GCTGACAAGT CTTTCTAGAA ATTCTACTGC ACTGCCTGGC TCAGCTGCAG CTGCAGACAT TTCTGCAGGA 003840 003841 GGAGCAGGTG TTTCTGTCTT CTGTTCCTTC TAGGGCCACC TGTCCCCTTA AACACAGGTC CACGTTGTGT CAAGAACCTA 003920 003921 GTGCATCTGT GTGTGTCTGT CAGTGTCTCT GTGTCAGTGT TCTTGTGGGT GTCTGCACGG TACCCGGCCG CCGTTCTGCA 004000 004001 ATGCATCACT CCCGCAGAGG GGGGTGCAGA TCAGGCGCCG TGCTGCGCGT TGTTGTTCAA CAGTGGCTTT TTCTTAGATA 004080 004081 ATCGTGCTTC CTCAGCGCCC GTCGGGTTGT GGCATCCTTG GATCTGCAGG GATCTTCTCC GTTTGCATGT TCCTCGGGGT 004160 004161 GGCGTGTTCC TTGCTCCCTG GGTCCGACAT GTGTTCCCGC ACCTGCATGG ACTGCCCCGG TTCTGTGTTG TGTGCCGAGT 004240 004241 GCCGCCCAGT GTTCTGTGAC CACCCGTGTA GCTACTGAAA ATGGCTGGGT AAGCAAGTCA AGGGTGTTGG AGGAGGTCAA 004320 004321 GAGAGAGCTC AGTTTCCCTC TCCCCCTCCC CAAACACACC AAGAAGCATT TTTAACGTGT AGGTTGAGAA CAAGCCTAAA 004400 004401 GGATTCCCAC AGCTGGGAGC CAGCAAGAGA GCTTGGAGTC GCCTCTCTAG ACCAGATCTA GCCCCACCCT CACTCCAGCC 004480 004481 ATCTCGGAGC CCTTGTGTAG CAACGCCCGG TGCGGGCTGT GTGGGGTGCT CCCCTGCCAG CACCTCCGGC CAGCCCCGCC 004560 004561 CCTGCCGATC TACTGGACCG CAGACCACCT TCTGCCCCCG TGGGCCAGGT GGGAGCTGTC CGTTCAGGAC CATGAGCCAT 004640 004641 CCTCTGCCCA GACTAGCGAG GGGCAGAGCA CACCCCAGTG CTTACGCCTC CACCCCTGCA GCCTCCTGGC CCGCTCACCT 004720 004721 TCCTCACCCC TCCTCTGACC CACCCATGGT GCCAGGGCCG AAGCTGACCT TTAGCTCCCT CCTGCCCCTT GCTAGGGTCT 004800 004801 GAGCCAAGCC CCTCGACTCC CTCACTGTGT TGACACTTGG CACTTTGCTG GCCCCGAGAA AGGTCGATGA CACAGCCGCA 004880 004881 AATCTAATCC ACGTAGTTCC CATTTACTCC TTAATCTGAT TGATGTTCCC TCTTGCACTG AATAATACAT GCCTCTCTCA 004960 004961 GGTAAGCCAT TTTATAAAAC AAGAAGATAA AAAGCACCGT TGAGGCAGTG TTTGCTTTTG CCGAGCTGGT GTCCGACAGC 005040 005041 TCCCTGGGTG TTCGGGGTGG GAGAGCTGTT GACAGAAGCT CTCCGGGCCC TCAGGGGCTT AGATCCCACT TGAGTCGTAA 005120 005121 GCCTTCTTGC TTTTGATAAC ACAGTATTAT TTCTCTTACT GTAGAAGAAA AAGTTTATTA CCAAACAAGA GTATTTTTAT 005200 005201 GAAAGAAAAG GACAAACCTA TAAATTAACT CAACCTATAT CTCCCTTGAA AATACTTTCA GGCTCCACCA AAACGTAGAA 005280 005281 CTGAAAGCAT GTATTTTGGA AGAAAGAGAT ACATTTTGTA TGCTTTCTTT TCCTTTTGTA GATTCCCAGT TTATTTTCTA 005360 005361 AGACTGCAAA GATCACTTTG TCACCAGCCC TGGGACCTGA GACCAAGGGG GTGTCTTGTG GGCAGTGAGG GGGTGAGGAG 005440 005441 AGGCTGGCAT GAGGTTCAGT CATTCCAGTG AGCTCCAAAG AGGGGCCACC TGTTCTCAAA AGCATGTTGG GGACCAGGAG 005520 005521 GTAAAACTGG CCATTTATGG TGAACCTGTG TCTTGGAGCT GACTTACTAA GTGGAATGAG CCGAGGATTT GAATATCAGT 005600 005601 TCTAACCTTG ATAGAAGAAC CTTGGGTTAC ATGTGGTTCA CATTAAGAGG ATAGAATCCT TTGGAATCTT ATGGCAACCA 005680 005681 AATGTGGCTT GACGAAGTCG TGGTTTCATC TCTTAAACAC AGTGTGTAAA TTTATTCAAC TAACGATGGG AAATGTATTA 005760 005761 CTTCTGTACA CAGTGGACTG AAGTGCAATT TGTTGAAAGG GAACAAGTCA TTGAAGAGAA AAAAAAAGCC CAATACTTAG 005840 005841 AGTCCCAATT TTGTCTCATT TGCCAAAAAA AAAAAAAAAA AAAAAAGCAA ACCCCCTATG GTTGATATTG TTATAATGTA 005920 005921 TATACTGTAT AATATGAAAG AGAATCGATG TATCTCACTT TTTCATTATT TGCTAACCAA AGCTGTACAT TTTTCATATG 006000 006001 ATCTGCAGCC TTTTGGGTAT CAAATGGGTC AAAACCATGG GACCTGCCAC CTCCCATCAG CAATTCTGGA AATACACTAT 006080 006081 TTCTACTGGT ATTCTTGCTT TTTTTTTTTT TTCATTTTCT TGCTGAAATG ACATGAATTG TTGAGTTTAT TTTTACACAG 006160 006161 TAAAGAGTGG AGAAAGAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT056405_smProtein_5897:6130 |
Length | 78 |
Molecular weight | 9423.0305 |
Aromaticity | 0.246753246753 |
Instability index | 53.0780519481 |
Isoelectric point | 6.94146728516 |
Runs | 10 |
Runs residual | 0.00621118012422 |
Runs probability | 0.0517311429077 |
Amino acid sequence | MVDIVIMYILYNMKENRCISLFHYLLTKAVHFSYDLQPFGYQMGQNHGTCHLPSAILEIH YFYWYSCFFFFFIFLLK |
Secondary structure | LLLEEEEEHHHHLLLLLHHHHHHHHHHHHHHHLLLLLLLHHHLLLLLLLLLLHHHHHHHH HHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH HHHHHHHHHHHHHHHLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTT TTTTTTTTTTTTTTTii |