NONHSAT056516
Revision as of 17:42, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056516 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1907 nt |
Genomic location |
chr17+:79519501..79521407 |
Exon number |
1 |
Exons |
79519501..79521407 |
Genome context |
|
Sequence |
000001 TGCAGGGACT CCGGGAGCTG GGGCGGTCGC TGGTACCCAC GGGGAGCAGG GGAGCCTTCC TAGGGGCCGC GGCACCGTGC 000080
000081 CGCAGGTCGA GGTTGACCCG GCCGGGCTGG TGGGAGCCCT CGGCGGCTTC ATGGCCCCGG CTGCTGCACG GGTTCCCCAG 000160 000161 GGTGGGGAAG CGGGTCCTGG CCGAGCAGAG GTTGCTCTTG GGCGGGGCGT CTCCCCGGAG CAAGCGCTCA GCTACTCGGG 000240 000241 CTTTTGCGTA AACGCCTCGA TTCTCTGGGC TCTCGGAGAG CAGCTGGGTC CTGCCGGAGC GCACTCCAGC CGGGGTCGGG 000320 000321 GTGGGGCAGC GCCGGCTCTT GTCGTCCTAG GGATGGGTCT CTGCCCTGTG CTCTGCGAgc cgccccggcc gcccccgcgT 000400 000401 TCAGGGCCCA GCGGAGTGAG CCAGCTTAGG TGGAAGTGCG TCCCTCCCTC CGTGGCTGAA CACGTGGGGA CAGGGAGTAC 000480 000481 ACCAATGGGG TTTCTGGGTT GGGGGCAGAG GACAAGAAAA TGACTGTGAG CCAGGGCAAG ATACCTCCAC CCTCTCCCTC 000560 000561 CTGGCAGCTC TCCACTTCCT CCAGGAGAGA AGTACTGACC AGAGAACGCC CGTGGAGGGG CCTGCAGTAC GGACACCTGC 000640 000641 TCCATGCCCG GAAGAGAGCG GAAACCAGGC ACACCATTCA CAAGTAAATG ACCAAGGAAC CCCGCCCCCG GCCCGCCTCC 000720 000721 CTCCGTTTAA GAAGCCAATC TGAAGAGCGC TAAGGCCAGA CACCCTCGAG GGAGAATCTA GGGGCAGGGC TGCAAAACTG 000800 000801 GGCTTGGAAG TTAGGCAGAC ATCGTGGAGT CCGGGTGCAC CTGCTGGAGC ACAAAGCACC ACTTGCAGAC ATCCTGACCG 000880 000881 CCCCCCTTTG AGGTTGGGGT GGGGACTGAC CCCAAGGCAA CGGGGATGTC TGATTCTGAA TGTTGGGTTA GACAGACTCA 000960 000961 AGTGCGGCAC CTGGAGTCAG TTCCTTGCTC CTCTCTTCTC GCCAGGGCTG CTCTGAAGGT GTTTGGGCTG GAAATGCTGT 001040 001041 CTTTGATGCT GGGGAGTGGG GAGAGGAGGG CCAGGTGCAT CTCATTTGGC CTTCAGAGTC AGGAAGTCAG ATGCCGCATC 001120 001121 GTTGTGAATT TCCCCACAGG GATCCTCCGC TGGTCTTCTG ACCGAATTTC CCCACAGGAA TCCGCAGGTC TTCTGACTGC 001200 001201 TAGTTTTAAC CCTCTGAAGC CTTGTGAGTC ACTCGCTCAC ACACACCAAC CCCATCCAGT CCTCCCAGGC CATCTCTTCC 001280 001281 ATACGGATGG TAACATGCCA AGACTGTCCT AGAGGAAATG ATCACGATCA CGTGGAGGAG GAAACGGACG TGGGAGAAGG 001360 001361 CCCGCCAAAC CAGCAGCCTC ACCCCGCGGT TTACTCCGCT GCCCACCCCA CTCTGCTCCG GGGGCTGGCA GGCTTTTGGC 001440 001441 CCCACGCCAA GCCCAGCTCC TATCTGCAAC AAGATTTATG ATCAGTAGTC ATGTGGGGGA CCTTAAGCAT GGATCCCAGG 001520 001521 GGAAAGGGGG TGAGTTAGAC ACAAGCGAAG GGCTGAAGGC CGGCTCTCCA TCAGCTGCTG GGCTGTGCCG TGCCCCACCT 001600 001601 GTACTTGGCG AAGAGTGATG AGGGCTGAGG CAGCCTCTCT GTCCGTGGGT GTGGAAGATG CACACACTCC TAGCGGAAGC 001680 001681 CTTCGAGACA GCAGCGCAGA CCGCTGGACA CTGCGTTTCT ATGCCCAACT TGGAGGTGTT ATCATCTCCC TAAGCACGAA 001760 001761 GTATATGAAG GAGTCAATTT AGGTCAGACT GAGGGGAGAA AAACCATGAA GCTTCAGGCT GTGTTGAGGG CGAGGAGGGC 001840 001841 TGGGCCTTGA GGGACCTCTC CTCAGAGCAG CACAGCCCAA TAAGGAGAAC ACAGCAGGAA GGTGAGG |
Predicted Small Protein
Name | NONHSAT056516_smProtein_1286:1480 |
Length | 65 |
Molecular weight | 7046.6348 |
Aromaticity | 0.0625 |
Instability index | 42.3 |
Isoelectric point | 4.98236083984 |
Runs | 7 |
Runs residual | 0.03921875 |
Runs probability | 0.0448179271709 |
Amino acid sequence | MVTCQDCPRGNDHDHVEEETDVGEGPPNQQPHPAVYSAAHPTLLRGLAGFWPHAKPSSYL QQDL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLHHHHHHHLLLLLLLLLLLHH HLLL |
PRMN | - |
PiMo | - |