NONHSAT056516

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT056516

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1907 nt

Genomic location

chr17+:79519501..79521407

Exon number

1

Exons

79519501..79521407

Genome context

Sequence
000001 TGCAGGGACT CCGGGAGCTG GGGCGGTCGC TGGTACCCAC GGGGAGCAGG GGAGCCTTCC TAGGGGCCGC GGCACCGTGC 000080
000081 CGCAGGTCGA GGTTGACCCG GCCGGGCTGG TGGGAGCCCT CGGCGGCTTC ATGGCCCCGG CTGCTGCACG GGTTCCCCAG 000160
000161 GGTGGGGAAG CGGGTCCTGG CCGAGCAGAG GTTGCTCTTG GGCGGGGCGT CTCCCCGGAG CAAGCGCTCA GCTACTCGGG 000240
000241 CTTTTGCGTA AACGCCTCGA TTCTCTGGGC TCTCGGAGAG CAGCTGGGTC CTGCCGGAGC GCACTCCAGC CGGGGTCGGG 000320
000321 GTGGGGCAGC GCCGGCTCTT GTCGTCCTAG GGATGGGTCT CTGCCCTGTG CTCTGCGAgc cgccccggcc gcccccgcgT 000400
000401 TCAGGGCCCA GCGGAGTGAG CCAGCTTAGG TGGAAGTGCG TCCCTCCCTC CGTGGCTGAA CACGTGGGGA CAGGGAGTAC 000480
000481 ACCAATGGGG TTTCTGGGTT GGGGGCAGAG GACAAGAAAA TGACTGTGAG CCAGGGCAAG ATACCTCCAC CCTCTCCCTC 000560
000561 CTGGCAGCTC TCCACTTCCT CCAGGAGAGA AGTACTGACC AGAGAACGCC CGTGGAGGGG CCTGCAGTAC GGACACCTGC 000640
000641 TCCATGCCCG GAAGAGAGCG GAAACCAGGC ACACCATTCA CAAGTAAATG ACCAAGGAAC CCCGCCCCCG GCCCGCCTCC 000720
000721 CTCCGTTTAA GAAGCCAATC TGAAGAGCGC TAAGGCCAGA CACCCTCGAG GGAGAATCTA GGGGCAGGGC TGCAAAACTG 000800
000801 GGCTTGGAAG TTAGGCAGAC ATCGTGGAGT CCGGGTGCAC CTGCTGGAGC ACAAAGCACC ACTTGCAGAC ATCCTGACCG 000880
000881 CCCCCCTTTG AGGTTGGGGT GGGGACTGAC CCCAAGGCAA CGGGGATGTC TGATTCTGAA TGTTGGGTTA GACAGACTCA 000960
000961 AGTGCGGCAC CTGGAGTCAG TTCCTTGCTC CTCTCTTCTC GCCAGGGCTG CTCTGAAGGT GTTTGGGCTG GAAATGCTGT 001040
001041 CTTTGATGCT GGGGAGTGGG GAGAGGAGGG CCAGGTGCAT CTCATTTGGC CTTCAGAGTC AGGAAGTCAG ATGCCGCATC 001120
001121 GTTGTGAATT TCCCCACAGG GATCCTCCGC TGGTCTTCTG ACCGAATTTC CCCACAGGAA TCCGCAGGTC TTCTGACTGC 001200
001201 TAGTTTTAAC CCTCTGAAGC CTTGTGAGTC ACTCGCTCAC ACACACCAAC CCCATCCAGT CCTCCCAGGC CATCTCTTCC 001280
001281 ATACGGATGG TAACATGCCA AGACTGTCCT AGAGGAAATG ATCACGATCA CGTGGAGGAG GAAACGGACG TGGGAGAAGG 001360
001361 CCCGCCAAAC CAGCAGCCTC ACCCCGCGGT TTACTCCGCT GCCCACCCCA CTCTGCTCCG GGGGCTGGCA GGCTTTTGGC 001440
001441 CCCACGCCAA GCCCAGCTCC TATCTGCAAC AAGATTTATG ATCAGTAGTC ATGTGGGGGA CCTTAAGCAT GGATCCCAGG 001520
001521 GGAAAGGGGG TGAGTTAGAC ACAAGCGAAG GGCTGAAGGC CGGCTCTCCA TCAGCTGCTG GGCTGTGCCG TGCCCCACCT 001600
001601 GTACTTGGCG AAGAGTGATG AGGGCTGAGG CAGCCTCTCT GTCCGTGGGT GTGGAAGATG CACACACTCC TAGCGGAAGC 001680
001681 CTTCGAGACA GCAGCGCAGA CCGCTGGACA CTGCGTTTCT ATGCCCAACT TGGAGGTGTT ATCATCTCCC TAAGCACGAA 001760
001761 GTATATGAAG GAGTCAATTT AGGTCAGACT GAGGGGAGAA AAACCATGAA GCTTCAGGCT GTGTTGAGGG CGAGGAGGGC 001840
001841 TGGGCCTTGA GGGACCTCTC CTCAGAGCAG CACAGCCCAA TAAGGAGAAC ACAGCAGGAA GGTGAGG
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Predicted Small Protein

Name NONHSAT056516_smProtein_1286:1480
Length 65
Molecular weight 7046.6348
Aromaticity 0.0625
Instability index 42.3
Isoelectric point 4.98236083984
Runs 7
Runs residual 0.03921875
Runs probability 0.0448179271709
Amino acid sequence MVTCQDCPRGNDHDHVEEETDVGEGPPNQQPHPAVYSAAHPTLLRGLAGFWPHAKPSSYL
QQDL
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLHHHHHHHLLLLLLLLLLLHH
HLLL
PRMN -
PiMo -