NONHSAT057072
Revision as of 17:44, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT057072 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4044 nt |
Genomic location |
chr18+:5240743..5246490 |
Exon number |
2 |
Exons |
5240743..5241888,5243593..5246490 |
Genome context |
|
Sequence |
000001 GCATTTTTCA TGGAAAGCTC CTCATGCTTT TTAATTCCAG TTTATCCATT TGTGTGGCTT TAACCTCCAC ATCCAGGTCT 000080
000081 TTCTGGCTAA ACTGCAGTAT ATCCACAATG GGGCCAATGG ACACATAAGG GAGGCCCTAT CACAGGAACA CGAACACCCG 000160 000161 GAGTCGCTAG AAATCAGATT CCACCGGCTT TGCTTCAGGC CGACTTCCTA AGGAAGGCAT GGTAGCATCA CAGATGCTGT 000240 000241 TTGTCTCAGT TTCCTGAGAA GCCAGTTTCT TAGAGCTGTC ATTCAAGAGT GGGTCAAATT TGAGATATAA AAACCTTTCT 000320 000321 CAAGGTAGAC TCTTTGGCCC CTATGCCTAG TATGTCAGCT GGGCCTCTGA AGCTCTCCTC TTTGAGGTCC TGGCAGGCTC 000400 000401 TGGCCCCTGT TGAGAAGGGG AAGCAGTCAT GTGAACTCAT GTGCTGGAAG AATCCACTCT ACCCCTTCCC TGGCTTCTCT 000480 000481 GCTGCAATTT TTGTCTTTAA ACGTATTTTC AGGTGATTCC AGTTTGCATA CATAATTGAG AAATATAAGA TTTGGTCCCC 000560 000561 AGTAGAGAGC CAGGTGAACT TAAGAAGGAG TCCATCTAAG AAAATTGCAC AATTATCTAG TTTCACTTGG GTTTAGCTTT 000640 000641 TATGGCTTAC TTGATTTAGT AATCAAATGA TTTTCAAATG ATTTTGATCA GGTGACTCTT CGTAAACTAG AGAATGAACT 000720 000721 TGAGAGCCGA ATTAGCACAG TTTAAAAATA ATCATTTAGT TTTTGTTCTC TATTGTGTAA ATTATTGAGG TTTGACTGTC 000800 000801 TTGGCTAAAC TAAGGCTCAT CTAATATCTT TATTTTTGAT ATCCTAATTT CTTGCCAATT AATTGAAGGT AACATACTAG 000880 000881 CAGACCAGAT AACTACTTAT GCAAACCTCA GATAACCACT AATTTAAACA AAATTAAATC CTTTGCCTTC CCCAGATCCT 000960 000961 TTGCACATGG CCTGCTATCA ACAATCCTCT ACAATGATTC tcagcatcac ctagggagct tatgtaaaat ctcaaattcc 001040 001041 tgggccctat ccccagagtt tcttatcaag taagtctgca ttgggatctg aggatttgca tctctaacaa aaattcctag 001120 001121 gcgatgctca cactgttggt gtaaggTTTC CTTGATGGAG AACTATCAAA GCAGTCAAAG CTATCAAAAT AAAAAAGAAT 001200 001201 TCTGATTggg tgcagtggct cacacctgtc attccagcac tttgagaggc caaggtgggc agatcacatg aggccaggag 001280 001281 ttcaagacca gcctggccaa catggcagaa accccatctc tactaaaaat accaaaatta gccgggcatg gtggaacaca 001360 001361 cctgcaatcc cagctactcg ggaggctgag gcaagagaat cgcttgaacc tgggaggcag aagttgcagt gaaacaagtt 001440 001441 ggtgccaatg cattccagcc tggatgatgg agcgagactc tgtctcaaga aaaaaaaaac aaaaacaaaa aCAGAACTCT 001520 001521 GCCTCATAGC GTCTTTTAAG TTATACACTG GACCTATCCT TTCCTCACTG ACAGACATTT TAAAAATTTT TTGGTAAGGC 001600 001601 CTAGTTCATA TAAAATGTAA TCCAAGCCAA AAGTTAACAA GAATAAGGGG AGGAAAGGGG ACTCCAATAG CAGAGAAAGG 001680 001681 TATTTACCTG GGATATACAC TGCAAGAAAA TCAAAGCTAT AAGAAACGTC CATGAATAGT AGCCATAAGG CATCAGAGTG 001760 001761 ATAAAATTCC TGTCCCTAGG AGGGAATATT Ggagtttgcc agagaaacag aatgagagag acagagaggt ttattgtagg 001840 001841 aattggctca tatgattacg gaggctgaga agacccacga tctgccatct gcaagctgga gaatcaggaa agctggaggt 001920 001921 gtaattcagt caagtccaat ggccagagaa gcaagtgtac tgatatccaa gagcaggaga aaatagatgt cccagaacaa 002000 002001 gcagagaggc tgattttgtc cttcctctgc ctttttgttt catatggggc actgaatgga ctgatgccca tccacattag 002080 002081 tgagggtgga tcttctttac tcagtctacc agtagaaatg tcaatgactt ccagaaacac cctcaccaac acacgtggaa 002160 002161 ataatgtttt accaggtatc tgggcatccc ttggttcact caagttgaca caaaattaac catcacaGAA GGAGACTGGC 002240 002241 CTTACTCTGA AATTAGGAAA CTAAAGAAGT GACCAGAATG GAGACTAGGT AGAGACAACT AGTTCTCTAC CAAACATGTA 002320 002321 cagttattcg ttggtatctg aaggggattg gttccaggaa ctctcaggga taccaaaatc tgcaggtgct caagtcattt 002400 002401 atataaaata ttacagtatt tgcatataac ctttgcacat cttccatata ctttaaatca tctctacatt acttataata 002480 002481 atgaatgtgt aaatgctatg aaaatagtta ctacactatt gtttaTTTGT ATTTTTATTG AATTGTTTTG GGGTGGGGGG 002560 002561 CAGCTGTAtc tttcttagta atagaacccc tggttttagc tgggcacatg actgccctca ataaagatta aagtacccca 002640 002641 gccttccttg agattgtggc catgtgactg aactttagac agtgagatat aagcagatat cttctgtggc agtgttagga 002720 002721 aactattaaa gacagtaaga acattgccct ttgccttctt tttcctttct tcatttttct gcctggaatg caaatgtgat 002800 002801 ggctaacacc ctagcagcca ttttagatta tgaagatgag agtcactccc caggaagggt ggacctgaaa gctggattct 002880 002881 agatgtggaa tgacaatacc agccctggac tacctacctG TAGGCTGTGT GTGTGTGTGT GTGATTGACA GAGAGAGAGA 002960 002961 GAGATAGATA CCACAAGTAA CACAAAGCAT CATACCTGGG ACTGGGAAGG TTAATGTTTA AACATTTTAA atgtggcatt 003040 003041 ggtttgttga agacagtcaa gcagtaggtg ctgcaggctt tgttgaggct agaaagctgt tggtctttat taggtgatgg 003120 003121 caaaacaatg gatcacattt tcatgtgctg tgtcttggga ggcaaatgat gagaatgtag gattggggaa aatggtaagg 003200 003201 aaaatccaaa atgttcatgt tttctaaccc cttcttgcCA ATCTTAAAAG AAGGACAAAC AGGCTAGATT AAGCAAGTCT 003280 003281 ACAGTTACAA TTGGAAGGAA ACACAGCCGT ACTAAGGAAG TACTCTGTCT GTGGCCTGCA GTCTAGTTTG ACTAGGTCCT 003360 003361 GTATTTGAGC TTTGAAAGAG TAAAGAATAC AAGTGCTCGT ATACCCCTGA AGTAGTTACC AGCAGTGACT GCAAGGAGGT 003440 003441 AATCTTATGG GATGAAACTA TAACTCTGTA TTAACCATCA TATATAGCat atatgtgtat atgtatgtgt gtgtgtgtat 003520 003521 atgtgtatat aaatatatgt gtgtgtatat ACACACATGT ACAcacccta caacccagtg atttcaaaaa attaaacatt 003600 003601 tgtttagctc atgaatctgt gggttgggtg aacatttcta ttggtcttgg ctgggctcac ctgtacccag tcagctgcag 003680 003681 ggtctagctc ttcttatctt ggctgggatc tcacacatgt ctaggatcag ctgctttact agtctaggat tgtcttggct 003760 003761 gagacaggtg gactactcag ttctcctcca ctgccttatc cttcagctgg ccagcccaga aatgttgcca tgTTTACAGC 003840 003841 ATAAGAGCAA GCAAGAAAGA ATAATATGCA ACCACTTTTC CAAGCCTAAG GTGAAAGGGC GGGCAGAACC Tgtggtgtta 003920 003921 ggaggcaact cataccagcc catgggtcta ccgtttaatt ttcagaaatt tggcaagctg attgttaaca cagctgttgt 004000 004001 ttaatttatg tacttgtaat taaataattt acattaaaac aaag |
Predicted Small Protein
Name | NONHSAT057072_smProtein_3716:4003 |
Length | 96 |
Molecular weight | 10687.603 |
Aromaticity | 0.0842105263158 |
Instability index | 51.2147368421 |
Isoelectric point | 9.63934326172 |
Runs | 15 |
Runs residual | 0.0288437629507 |
Runs probability | 0.0431254784197 |
Amino acid sequence | MSRISCFTSLGLSWLRQVDYSVLLHCLILQLASPEMLPCLQHKSKQERIICNHFSKPKVK GRAEPVVLGGNSYQPMGLPFNFQKFGKLIVNTAVV |
Secondary structure | LLLEEEEELLLLLHHHHLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEELLLLLLLLL LLEEEEEELLLLLLLLLLLLLHHHLLEEEEEEEEL |
PRMN | - |
PiMo | - |