NONHSAT061490

From LncRNAWiki
Revision as of 17:56, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT061490

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1661 nt

Genomic location

chr19+:15509507..15511167

Exon number

1

Exons

15509507..15511167

Genome context

Sequence
000001 CGGCGAGGCT GAGGAAGGTC CAGCAAGAGC AAGAGTCTGA GGCGGAGGAG GCAAGCGCCA GTGCGGGAGC CCTGAGGGCA 000080
000081 GACAGACCCG ACCAAGGGGC GTGAAGGGCT CAGCCGCAGA CAGGCCCGGC CTGACAGGGC CGGCGGGCAG GGCAGAAGGC 000160
000161 AGGCCCGAGG CTGCCACAGC CCACAGGTGC TGCCATCTCT CCTGGGCACG GCGGTGGCCT CTTGGCAGCT AGCTGGGGCG 000240
000241 GCACAGGCGC CTTGGACCTT GAGTCTCTGA TGAGCTGGCC CCCTCCCTCA GGGGCATCAG GCCCCCAGTG CACCTTGGGG 000320
000321 TTCGTGCGCC GAGTGACCTA GCGCCAGAGC TTCTGAGCAA CGGTGCCGAG CGGTGTCAGG TCTCGGCCCA CAGACGCCAG 000400
000401 CGGTCGCCAG GCGGCCGCAG AGGGGCAGGG GATGAGTCAG GCCTTGGGAG CTGGGCCTGG CGGGAAGCAG GGTCCATGCA 000480
000481 CGGCCGAGCA GGTGGCGGCT CCCAAGGGAG GCCAGAGGGC GGCGAGCTGG CAGAGCTATG GCCCTGCTCT CCTGGCGGCA 000560
000561 GCCCCACAGC GAGGCAGAGG CAGAGGGGTG GAGGGAAGCT GGTTACCTTT CCACCATGCG GTCTCGCTGC CGCTTTTTCT 000640
000641 GCTTGTCCTG ACTCTTCTTG CCTGCCTGCA ACTTGCGCTT GGTCTGGCCA TTTTCATCCT GGGTGGTTAG GGCCCCTGTG 000720
000721 GGAGCAGATG GGCACTGTCA CCAATTTGGC TCTGCCAGGA CAGGGCAGGC CCTGCGGCCT CTGGCTGAAT CACCCACTGT 000800
000801 CCACTCCAGA GGGTCCATCG AGAATAGCTG TCCAAGCAAG GCCTCTGGCC ATGAGCAGGG CTGGGTATCC TGGGCTGTGC 000880
000881 AGGGAGTGGG TTTGGCCTAG GCCCCAAGGA GTGGGGGCCA GGCGATGACC CCTCCACTCT CCAGGACACC CATGCTCTCT 000960
000961 GTGCAGTGGG CCAGGAGGAG GCTGGAAAGC AAAGAGGGGG TATCTTTGTG GGGACACTGG CACATGTTCA GAGGGGCCAG 001040
001041 GTGGTGGGAT GCAGGGAGGC TGCTCACATG GCCCTGCCCA CCCCCAACCG GGCACCGCGG CAACAGTGGG CTGACGCTGG 001120
001121 ATTTGCTGTT AGGTACCTGC TGGCGCTCAT CACTCAGGTG GGGGGACACG GAATCCCAAC AGGGGCTGGA GAGGTGCTAA 001200
001201 GGGAGAGGAT ACGCACACCA GAGCCGTAAA AACTGCACCG AGGGTCCCAG ATCGGACACC AGCCACTGAG GACTTGGAAC 001280
001281 TGCGCGTTAC TGAGGGACCG AGGGCAGGGG GCGTGCCTGG GGTTCCCCAC ACTTTTACTA GCTGCCCCCA TCTGAAGGCA 001360
001361 AAACCAGTGT GCTAGGCAGG GGTCACCACC ATCCACAGCC TCCGCCTGGG AAGGAGGAGG AAGAGTGGGA AGGGGGTGGA 001440
001441 GGCGGCGAAA AGAAAGCCCC CTGCCAGCAC ACACTCGGGC CCACAAGGGA GGTCCCCAAC TGGCCGCATG TCTGCCGCAA 001520
001521 CCCTGCCCTC AGCTGGGTCC CTCCCACTGT GAGCCCCTGG AAGAGCCGCC CTAGCACCAG GCACCCCAGG AAAACTCACC 001600
001601 CTTCTCTGGA TCCTCTTTGC CTTCTTCTCT CCCATCCTCT TTTCCCTCCT CATCCTCTCC G
[back to top]

Predicted Small Protein

Name NONHSAT061490_smProtein_431:709
Length 93
Molecular weight 9315.8094
Aromaticity 0.0652173913043
Instability index 54.1706521739
Isoelectric point 9.84002685547
Runs 12
Runs residual 0.00477009696591
Runs probability 0.0231849496556
Amino acid sequence MSQALGAGPGGKQGPCTAEQVAAPKGGQRAASWQSYGPALLAAAPQRGRGRGVEGSWLPF
HHAVSLPLFLLVLTLLACLQLALGLAIFILGG
Secondary structure LLLLLLLLLLLLLLLLLHHHLLLLLLLLEEEEHHHLLHHHHHHLLLLLLLLLLLLLLLLH
HHHHLHHHHHHHHHHHHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiTTTTTTTTTTTTTTTTTTTTTTTTToooo