NONHSAT063735
Revision as of 17:58, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT063735 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3844 nt |
Genomic location |
chr19-:21857296..21861139 |
Exon number |
1 |
Exons |
21857296..21861139 |
Genome context |
|
Sequence |
000001 CCCGGCCCAG CCCCTCCTCA CTCCCCTGGA CTCTTCCACG GTGTCTCCGG GCCCCTGCAC CATCCTGTGT AACTCTCTGA 000080
000081 TGAAAGCGGA GGTGGCAGCA TAAAGATGAT GGGGGAACTG CCCCGCATGC CGAGGAAAGC TCGCCCAGCT GCGCAAAATG 000160 000161 CTCTGATTGA CGTCGGGTTT CTGCGCACCA AGCTGAGCCA TGACCAAGGG TTAGAGCCGA GGCGACCCCG GACGTGGGCG 000240 000241 CTCCATCTGC TGCTGCGGTT CCCCCTGTTC TCGGCTAAAC CGTGGCTGGA ACCGGTGCCC GCCAGAGGTG CAGGAGCCGC 000320 000321 CCCGCGGGCA GAAGGAGGCG GTAGCCGTGG TCCCTGAAAA CCAGGCCCTG CTGACAAATC TCAGACGCCA GGAACAGAAG 000400 000401 AACCAGGAAA AATGCCCGAC AGCTTGAGCC AGATGGACGG ACTGTTGGAA CACCTGAGGG TGAAGCTGCG CGAACTCCTC 000480 000481 AAAGAGGAAC AGCAAAGCAG CCACCAAGAT GGACCAGAAA GATGAACAAA GAAAATTAGC AGCAATCAAA GGCAGATGCT 000560 000561 AAAGCAGTAC AAAACCGTTC ACACAACGAT AGAGACGGAA TTGATGAAGA AGTCTGATAA ATGAATGACA GAGTGAAAGG 000640 000641 ACAGCAGTGA CCATGGTAAG GTGCTGACGA TTCTGGTCCA CTGGATCCCA TCATCCCTAG GACAGTAAAT CTCATCGCAG 000720 000721 TCGCCACTCA GCAAGTTACC ACTGCAGCAT TTCCTGTTTG TTCCAAAATG AATAAAGGTG ATTCTCATCA CAAGGGCAAA 000800 000801 TACAGAGTAG TTTATTATTA TTATTTTTAA CTAAACTGTA GCTGTAGCTG TTTAGTTTAC TTGTTCTAAG TTCTTATAAT 000880 000881 TTTGAAAATA CAGTTGACAC TTGTATGACT TATGAGGTTT TTGATAGTCT AATGTCGTTT GATGTTCAAA GAACAGTATA 000960 000961 TTTTAAATTA AGAAGAATAA ACTGTGTGTA TTTGTTTTAT ATATTTAAGG CTTAGAGGCA CAATGCTTCT GCTTATGATT 001040 001041 TGAAAACTTC AAAGGTTGGT TTTCCATCTG TTCATACACA AAACAGTGTA TCGTGGTGAA ATGTTTGTTT TTTTTAAAGT 001120 001121 GGCAGCCACA GTTCCTGTCT GTCCGGATAT ATTTTGGACT TTTGTATGTT AAGCAGAAGA AAGAAACTTC GTTTTGTTTT 001200 001201 AGGTAATCTA AGATTGTTGT ACGCACACAA AAAAACTTCA CAGATTACTG TAGGGTTCAG CAAACTGTTT ATATAGTGTA 001280 001281 ACATTAGTAT CTCTATTTTC TGATGTCTAG ATTTTTTTTA GAAAAGATTG TTTTCGTTTT TGTTTTTTTA ACAAATGTCT 001360 001361 CCACAAATTC TGGCTTATTT TATAAAATTG CAGAATACTA AAGAACTGGG TGCTTTGCCA TACTATATGA ATACTGGCAC 001440 001441 TCaattaaaa tatcaaatat tttaatcaaa atttagattt aaataatGTC TTGATTTTTC ACTACAGTGA TAGACATTCA 001520 001521 CAAATATTTC ATATATTAAA GCTATCAGTA TTAGGTTTTA CTTAGTAGTA ATATATATAT AAGATCAAGA ATCTGTTCAA 001600 001601 AATGGATATC TTTCATCAAT AATTTGGTGC TTTCAAATAC CCAGAAGTCT TGTTTTAATC ATATTAAGTC TGAGAATAAT 001680 001681 TTACTAATTT CATTTTTGGA ATAATGTGTT CAAAATTTTC CAGTTTAACC TAGTATTGAC TGAAGATGGG TAAACAAATC 001760 001761 GATTTACTTT TCAAATCTCA TAGGCCTATC GTGTTGCTGA AGATGTTTTC AATTCTCCCT TTCAATATTG TTTACAGGAA 001840 001841 TGCAGGTCTA GTCCAATCTG CTCAACCTGT TAATCAGTGT CAGCTGCCAG ATTCAAATTC ATTTTTAGTG TGCCTGTACT 001920 001921 TTTCTTTCCA TAACCTCTGA ATTCATTTCA TTTACTGATT TAAATGTGAT ATAATACAGC TCATACATTT AAAACAAAAC 002000 002001 CAGCAGGTAA AATGAGTTCT GGCTTAGTAT AAAGAAGCTG TTACTGAGTT ACATCATACA GGTGGATGCA GCTCCACAAA 002080 002081 ATTTTAGACA AAAAAAGTTG GACTGAACTA TATTGTGTGT TGCTATGACT TAGCCTCTAG TGCCCTTAAG AATAAAGACA 002160 002161 AATTTCAGCA AATTTATCCA GTTGCTTTCA GTACGTCTAA AGGTAACATA TCAAGAATTC TCATGCTACT GCCTGAGAAA 002240 002241 ACAGATTCTA CTGTTACCTA ATAAATCAAA ATCAACTGGA TGGCATTTTT GTAGCCTTGC ACCACATAAA GAGAAACTGC 002320 002321 AATGTAGGAC TAATAAACGC AGACTCCATC ACAAGGAAAA GGGTAATCCA GAACGTCACT TTCAAAATTT AAGTATTTAA 002400 002401 ACTTTTAGTA GAAAAATGTG GTAAAAGAGT GCTTTTGGTA AGCTTTGTGT AGTTTAACAT CAGCATGAAG TAGAAAAAAT 002480 002481 CTTTAAAAAT GTAAACAAAC AAAACCATAC ACCAAAAAAA CTAATATTCA CCAGTGCATA CATATTGATC TTTGTGTTGG 002560 002561 GAGAGTCTAA AGCAGAACAT TTGGTGAACT TGATAAAATT ATTTTAATCA CATTGGCATA CTGataaaat tatttatatt 002640 002641 tggccaggtg ccggggctca cacctgtaat cccagcactt tgggaggctg aggtgggtgg atcacgaggt caggagttcg 002720 002721 agaccaacct gaacaaatgg tgaaacacca tctctactaa aaatacaaaa attagctggg catggtggct catgcctgta 002800 002801 atcccagcta ctcaggaggc tgaggcagga gaatcccttg aactcaggag tcagagggtg cagtgagctg agatcgcgcc 002880 002881 actgccctcc agcctgggtg gcagagtgag actatgtcat aacaaaaaaa atttatttat atttaatttG ACTAAAACAT 002960 002961 GTTCACATCT TAAAAATACT GCTTTGTACC ATGAATAATA AATGTAAAGT CTTTATCCTC AAACGGATTC TGATTGTCAA 003040 003041 CTCAATACAT ATGGCAACCC ATTTCTCTGG TTTCTCCAAA CTGAAGTCTC ATGAAGGCTC AAATATGGAG TGAGAGGGAC 003120 003121 TCAACAACAG ACCATGAGAA GCAAGAAGGA TGAGGTAGGA TGGTCAGCTC TAAGGCTCAG GGATTCCTGG GGACCCCAAT 003200 003201 ATAATGACGT CAGCTATGAA GCTTACTAAC TGAAAATAAG CATAAGCAGC TGAAAACTCC ATGGCTTCGC TTCGGTGGGA 003280 003281 AGGAGTCTCT GGAATTACAG TCATGCCAAA AGGATTGAGC CAGAATGACA TGTATCTAAA GATTATTAGA GGGGACTGTT 003360 003361 CATAAGCACA TAAACATTTG TTCCAAATAT TATTACAGTA GCAATATCCT TTTCTGTAAT ATCAGCTTCC CCAAGATAGG 003440 003441 GTTGCCATAG ACAAATTAAG ACAAGTGCCT AATATGTTGT AGGTAATTGG TTTCTAAATT TAAAAAACTT GCAATAATTT 003520 003521 CATGAATCTC ATTAAACTCT GTTTGTGTAT AAATCTCACT GAAAGGCAGT ATCCATTAGC TATTTTCCTT AGTCCTTTTG 003600 003601 GGATTTTCTG TTGCTTGATT CCAAACCAAA CTTATTTTAA TCCTAGTTGT TTCTAAATCC CCAGATGTAA TAACAGACAG 003680 003681 CAGAAATGAA CCCAAGTTAC CCCAAACAGT CAACGTCTAA TATATTTTGT TCCCCAAATG AGCCAAAAAC CACACAAGCT 003760 003761 AAAAAACAGT GGGTTTAAAA TTTAACCTAA ATTTAACAGT AGCAGTTTTA CCATATGTAA AAATTGGCAA AGTCATAACT 003840 003841 TAAA |
Predicted Small Protein
Name | NONHSAT063735_smProtein_1745:1939 |
Length | 65 |
Molecular weight | 7355.6274 |
Aromaticity | 0.125 |
Instability index | 48.8875 |
Isoelectric point | 9.23748779297 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0566154389684 |
Amino acid sequence | MGKQIDLLFKSHRPIVLLKMFSILPFNIVYRNAGLVQSAQPVNQCQLPDSNSFLVCLYFS FHNL |
Secondary structure | LLLHHHHHHHLLLLLLHHHHHHHLLLEEEEELLLEEEELLLLLLLLLLLLLLEEEEEEEE EELL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooooo oooo |