NONHSAT069200
Revision as of 18:14, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069200 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5432 nt |
Genomic location |
chr2+:11956279..11966639 |
Exon number |
3 |
Exons |
11956279..11959724,11960537..11960640,11964758..11966639 |
Genome context |
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Sequence |
000001 TTTCCTTTAG CTCTGTAGGT ACCTTTTCCA TCACGGCGTT GTTTTGTGTA AGCAGTAGCT TTTTTCCTGT AGTAAAAGAT 000080
000081 GTCAAATTGA GACATGCACA TTCTAGGGGA GAAAAGTCAG GCACAACCTA GTGTATTTCA AGTCCTCAGA GCTATCATAA 000160 000161 CAGCACTGAT CTCAATAGAA ATCCTGATAT TTTAGTGAAA TTGTGTCCCT AAGCTATGCT GACAATTTGC AACAAGCCAT 000240 000241 TCATCAGCCT GTGTTAAGTA GTAAGGCTTT GCTAGGCCAA GCAAAAAGTC CACATCGTTA CTCCGACATC CTAACACTAA 000320 000321 CTATGCATTT AAAGTGATCC TTTTCATTTC CTTATTTAAA TATCATTGTC CAAGGTGTAT TGCTTTTTCC CTGGGAGGAA 000400 000401 TTATTTTAAA AACCCTAAAT CTCATAGTTG ATATGTCCTC TTGGAAGGCC AAGGTGCTCC AGTGGCAGAT GGCCACCGGC 000480 000481 CTGGTCCTTC CTAGGGCTGC CATCAAGCCA GAGCCGTTCC ATGTGCTAGC TGTCCTGTGG AGTTCTCTAG AATTGCTAGC 000560 000561 GAAGGCTGCC CTAACACAAA TGACCTTCCT TTTTTttttt tttttttaat tttactttaa gttctgggat ccatgtgcag 000640 000641 aacatgcagg ttttttacat aggtatacat gtgccatagt ggtttgctgc acccatcagc ccgtcatcca ggttttaagc 000720 000721 ccagcatgca ttagttattt gtcctaatgc tctccctccc cttccccccc aaccccctga ctggccctgg tgtgtgatgt 000800 000801 tcccctccct gtgtccatgt gttctcattg ttcaactccc acttatgagt gagaacatgc agtgtttggt tttctgttcc 000880 000881 tctgttagtt ttctgagaat gatggcttcc agcttcatcc atgtccctgc aaaggacatg agctcattct tttttatggc 000960 000961 tgcatagtat tccgtggtgt atatgtgcca cattttcctt atgcagtctt atcattgacg ggcaCACAAA TGACCTTCCT 001040 001041 TAGCACAACT CTTTAACTGG GTGCAGTTCT GATTTTACTG CTAGGTTTTG AATTAGGATG AAGGAGGGGA AGGTAGTGGG 001120 001121 TGGATATGCG TGTGGTGCAG TTGGCAAAAA CAAGCCCTCA GCACAGGATG GTGATCACTT AGCCTTTGTC AGGAGTGCTG 001200 001201 CGAATGTCTT TTCCCAGTTC ATAGctttta atgaaaataa acttagtttt atgtcattga atgtattgtt tcctctgtag 001280 001281 ttgtgctttt tgtgtattac caaagtcttc tctgacctgt gggcatgaag acagtcctcc tggattttat ctgaaggtgt 001360 001361 tgctttcaca tttaggtcta tagtccacta agaatggatt tatttaggta gaatgaagta ggggtgcagt ttaatttttt 001440 001441 ttttcctata tggatattca tttgtcccca caccatgtgc taaaaagact gccctggctg ggcgcagtgg ctcacgcctg 001520 001521 taatcccagc actttgggag gccaaggcag gtggatcacg aggtcaggag atggagacca tctggctaac acggtgaaac 001600 001601 cctgtctgta ctaaaaatac aaaaaattag ccgggcatgg tggcaggcac ctgtagtgta gtcccagcta cgcgggaggc 001680 001681 tgaggcagga gaattacatg aacccaggag gcggagcttg cagtgagccg agatagcgcc actgcactcc agccttggca 001760 001761 accagcaaga ctctgtctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaga ctgccctgcc cttgctgctc cgagatgcca 001840 001841 ttgtggtcat aaagcaagta tctgtgaacg tgtggttctg ttttggggct ttctgttttg ttccactggc aaaggcctgg 001920 001921 acgaattggc caaggccata gtgtcccagc tcccacagct gcagaagctc ctcaccttcc cagcatcgga agtgctaggc 002000 002001 ctggctttct gctcgttttc gtagcttcta gactcaaatt tcatcaaaac acccaagact ctgttatgag tttgattgaa 002080 002081 attgcagtga atctgtagag caatttagga agaattaata tctcaaaatt atattggatc ttccaattca agagtatagt 002160 002161 ctattcttca tttgtttagg tctttcctaa tatatttcag taaagtttta taattttagc tgtaaaggtc tggcacatct 002240 002241 tctgttagat ttatttctag acattttata ttttaaaatt tgatttaaaa taccatttac acaattacct tttctgcttg 002320 002321 tttctaatgc atgaaaatga tgcgattaat ttttgtactt tttttttttg gtacattgac ttgttaacct tattagagtc 002400 002401 tttttaattc tggtaattca tgtgtaggtt catcttctta atgtgcatat ttgttttttg tgatgacaat tttttcccct 002480 002481 aattctttct agtatgtata acttttattt atttttctta cattattgca tttgatagga caggcaatac agcagtgaat 002560 002561 tgccatgatg atacagacca cccttatttc actgttaata agatgttcac tgtaggtttt tttagtattc ccttctattc 002640 002641 ctggttggag ttctcatctg gattagatgt taaattgtat caaatcctct ttttaaattt aagtatttta aaaaatgaat 002720 002721 tttaatttgg gaggtaactg gtatcaaata ccctttttgt atctattgag atgatcatgt ttttctcttt taacctgata 002800 002801 atgtgttata ttgattttaa atattaaatt actatttcat tcctggaata aacccagctt ttatacattg ctacaatttg 002880 002881 tatacacaca tacacacaca cacacacaca cacacacgtg tatatatata ttttagaatt tttgcacgta tattcacaaa 002960 002961 tgagattggt ccacactttg cccatacttt ctttttttag gttttgtttt taaggttatg ctagcctcat cgaattaatt 003040 003041 tggagatgtt cttttttgtt tttatgctct gtcattcttt gttccctgga tgaccaggat aacccttggt gaaatggctc 003120 003121 atccttggtg ttttcttttg tagaaagact tgaaagtacg ggtttacttt cCATCTCGTG CTTTTCTGGG ATGTCTCAGC 003200 003201 TGCCTGACAC ACACTAAACT TTTGAAGATT TGAGTTTTCT CAGTGTTGCG GCAGCTTTGT CAGCTAAAAA CAGTTTGATG 003280 003281 CTAAAGGAAG CTTAGCCTCT CATGTTAATC TGTTATTTAT TTGTTTAACA GAGAAGTGAT TGAAAAGAAG CCAGAAAAGT 003360 003361 TTAAAGTCCA GTGTTTGACA GACATCAAAA ACCTGTTTTT CCCCAACACA GAACCCTTTT ATGCTGCTTT TGGAAACCGA 003440 003441 CCAGCTGATG TGTATTCATA CAAGCAAGTA GGAGTGTCTT TGAATAGAAT ATTTACCGTC AACCCTAAAG GAGAGCTGGT 003520 003521 ACAGGAACAT GCAAAGACCA ACATCTCTTC GTATGTGAGA CTCTGTGAAG TAGTCGACCA CGTTTTCCCG TTGCTGAAAA 003600 003601 GAAGCCATTC TTCAGACTTT CCCTGTTCGG ATACCTTCAG TAACTTCACC TTTTGGAGAG AGCCACTGCC ACCTTTTGAA 003680 003681 AACCAGGACA TTCATTCTGC CTCAGCGTAA AATGTCCCAA GCAGCCTCTT GCCAGCAGTG CAGAGCCTGG TTGTCACCCA 003760 003761 TTAAAGGATA GGTCTCCCCG GAGTGCACAG CTCCACCTGG GAGCCTGGCG CGTCATCATT GGCCTGACAG CAGAGAGAAT 003840 003841 TGAGAAGCAT TTCTCCCCTG CCCCACCCCG GGGCTGACAT TTCTAAGCAA GATAGGAAGG GAGCACTTTC TAGGCTAGGA 003920 003921 GTTGGGTGCA TTTGTACCGT GAAAAGCATT CCTCAGTTGT GGCTTAATGC CAGTTACGAC GCTGCCTTTC CGGCCTGCTC 004000 004001 CAGCAAGTAG CTACTGGTTC ACGTGCAGTT TGGGGCTGTG AAACCTAGGC AGAAGGCGGC TGTCTGAGGG CTGTCCCCGC 004080 004081 CTAGGACAGG GTCAATCGAG GAATGCCAGA TGTGCACGGT TTTTGGCAAA GTAGGGGGCA CATTTCCATT ATAGCAATGT 004160 004161 TAGTGCCACC ACCTTCTGAA CACAGTGGGG AGGGCTGTGA AGGCTCATGT GACCTGGATC TGAGGTCTCT GATAGAAATC 004240 004241 TGGACGCCAC CGGGTCCAGG CCTGGCCTCA GACTTGGCCT TGTGGATGGG CCCCTTACAG TATTTGCTGA CTAGTCTCAT 004320 004321 TTTTAGGTGA TAAATTTTTC TTTAATTCCT TTGGTTAAAG ATAGTCTATT TCATTGGCAT ATCTCCCCCC AGTTTTTGTG 004400 004401 GCTCAAGGCT GGAATATTTA TGCCTTAATA TATCTATGGC AGACATTTAA GAATGCGCTT TATCTAGCTC ATGGTAACTT 004480 004481 TGCAACGCCT TAGATTAAAA TGACAGTAAA TATTACTAAG GCAGTATTTT GAATGAGTTT GACACTGCCG GCTTCCTTCC 004560 004561 ATCCAGCGAG GTGGTGCTGA CAGTGTGGAC TTGAGCACAC TTATGCCAAA TGATAATGAT ACTGACTTCT GTTGGGAGCT 004640 004641 CTCCAAAGAA ACTGGTTGGT TTTAAGAAAA TAGTTTCAAG AAGTTCAACT ATATTCTTTT AGATATTATG TATTGTTTTA 004720 004721 CTCTGATTAG GTTACTGTGA TAGGCATTTA TTCATATTCT TTCTATACCA CTGTCATTAA TATATTAAAA AGATGTATGT 004800 004801 GTTAGACTAT CGAAAGGGCC TTATTCTCTC TTTCTCATAG ACTGACCTTC TTTTGGAATT TCTGAGTCAT TTATTTTCCT 004880 004881 TAGCTTTTTC CACTCAAATT AAGGGCAAGC GAAAAAGTAA TAATTTGGCA TTCTTTAAGC CTACAGAATG TGATTCTTTC 004960 004961 ACTTGTTTAT TACACTGGCT CGTGGACAGA ACAATTTGAA AAGTGAAAGA ATTATTTTGG TAAAAGATTT TGCTTTACTT 005040 005041 TTCGAAGCAT TATTTTTTTA AAGAGTGTTT TACTCCAACG ATTGAAACAT TTTCCTATTT AAATTTCATT GTTAGAATCA 005120 005121 CAGGAGGCAA AAAATGGAAC GGTTGAATGA AATTTTACTC TTTCTGTGAA AGAAAATCCA CAGAGTTGTT GCCTCCGTTG 005200 005201 TAGTTGGTGG GCCCCGTTAG CATTGGATGC CTTTGCCAAA TGGTTCATGT GGACACACAA AGGCAAACAG ATCTGCCATC 005280 005281 GATCGCAGAT TTCTGTAGAA ACACGGATGT GCATGTGCAG ATTCCCTTTT GCAGGtatta aaaataatta aaaataGTCC 005360 005361 TGCCTgaggt tgcagtgagc cgagcttgca ctactgcact ccagcctggg tgacagagta agactccatg tc |
Predicted Small Protein
Name | NONHSAT069200_smProtein_1097:1279 |
Length | 61 |
Molecular weight | 6422.3285 |
Aromaticity | 0.116666666667 |
Instability index | 44.7066666667 |
Isoelectric point | 8.97943115234 |
Runs | 7 |
Runs residual | 0.0330673758865 |
Runs probability | 0.0329447094152 |
Amino acid sequence | MKEGKVVGGYACGAVGKNKPSAQDGDHLAFVRSAANVFSQFIAFNENKLSFMSLNVLFPL |
Secondary structure | LLLLEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLEEEEEEEEELLL |
PRMN | - |
PiMo | - |