NONHSAT077773
Revision as of 18:48, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077773 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2433 nt |
Genomic location |
chr2-:239928722..239931139 |
Exon number |
1 |
Exons |
239928722..239931139 |
Genome context |
|
Sequence |
000001 AACGTTCCAT CTGGCCGGGT GGGCATAGAA GGGGGTGGAG GGAGCGCCTG GGTATTGTCA GGTGAGGAAG GTCAGAGGGA 000080
000081 GCCGTCCACC CACGTGGCCA GCGAAACGGA GCGTGGGAGG AGGCCCACGA ACACCTGAGA TCAAAACCCA CAGGGCACGT 000160 000161 GAGAAGATCC CAATTCCAGG GCGCGAACGA AGTCCAGGAG CTTCAAAATT GGCCCGCATC ATGAAAACAT CCGGCAGACG 000240 000241 ATTGAAGACT CACTCTTGAT GCAGACGCTG ACCCGAGGAA GGAAAAGGGT GAGAAACAGC TAGGCAGACA CAGCAGAGCG 000320 000321 GGAAAGAGGC CGACGCCGAC GGAATGCAGG AGGCTTGGGG GTCGGGCCCA GGAGATCTGA TCTGAGAGTA ACAAGTTACA 000400 000401 GGAGCGCGGA AAATCACAGA TGGAGGAAGG GCAGTCATTA CATATCGGAA CTCTCCCCTG AGTTGGGGGA CGCCTGCAGA 000480 000481 GTAGGCATGG AAGGGCTCAC GGAGTTCTAG GTTCAGCTGA TGAGAAAAGA TGCCCTCTGT GCTATGTCAT GGTAACAGCC 000560 000561 TCCGAACTCT GCATACACAC TGTATTCTTC CCTTTGTGTG ACACTCCAGA AACAACAAAT TGCATCCATA GTGATGGAAA 000640 000641 TCAGACCAGT CGTTGTCAGG GGCCACCGAG TTGACTGGGA TAGTGATGGA AATTTTAATG AATACATAGA TGTATAAACA 000720 000721 TGTCAAAACA TGTACTTTTT AAAATGGATC CATTTTATTG TATACAAATT TTACTAAATA AAATGGAATG GAAAATTATA 000800 000801 AGTGCTGTAC TTTCTGCATT GAGGAAAAAG AAAAGTCAAC CATTTTTCAG TCAAAAGGAA TATGTTACCT AAAAAAGCAA 000880 000881 AACAATCAGA ATGGTCTCAG GCTTCTCATC TACAACACTG CAAGCTAAAA GCAGTGGAAG AGCAAAAGAC TGCACCCCAG 000960 000961 GAACCCCTGT TCTCAATAAA GAGATTGTCG AAGTGTTAGG AGCAGAAGGT ATTTGAAGAT ACATAAAACC TCAGTGAGTT 001040 001041 TATCACCTAA GTGCCTCATC TAGGAAAGCA CTGGAGAAAC AGTTCTAATG AAATGGCAAA CCCAGAAACG ACATAGCAGA 001120 001121 GACCTCCGGA TGAAGGAGGA TGGAGAGGAA GGACGCAGTG GCATGAGGAA GCTTCATCTA CTCGGAGGCA TCCCGAGGGG 001200 001201 CTCAGCCGTT CGGAGCAGCG GAGGGGCACA AACGCTGCAG GGTGGCTGGG TGTGGTCTTC ACAGGGGACG GCAGAAGCAT 001280 001281 AAGAGAAACT GAGGCTGCGG GGTGAGTAGG AACCTGGCTG CAGTGAGTTA TGGGTTGAGA GAGACAGTGA GTGTGTGTTT 001360 001361 GGTGCACATA AGTAATTGTC TTTTTTTTTT TTTTTTGTCT CACTCTGCCA CCCAGGTTGG AGTGCAATGG TGCAATCTCG 001440 001441 GTTCACTGCA ACCTCCACCT CCCGGGTTCA AGCAATTCTT CCTGTCTCAG CCTCCTGAGT AGCTGGGATT ACAGGTGCTC 001520 001521 ACCACCATGC CCAGCTAATT TTTTTTTTTT CAGTAGCGAC AGGGTTTCAA ATCCTCTTAA GGGCACATTG ATAAGTCTGG 001600 001601 TTGAAAATAG GATTTGATTC ATCCAAAGCA GGAAGAAGTG ACTGCTATGA AGGTGAAGGC ACAGCCATGA AAGATTGATC 001680 001681 ATTCTGCAAC TCAGGAGGGT CTGTCTAGGG CCCAGGAGCC CGTGTTTTCC TTATTAACCA AAAATAATTA AGAAAGGCGA 001760 001761 TGATTCCGTC TGCACCCTGA GCTCTGCACG TTGATTTGGT GATGAACGGA GCACCATTGC CATGAGGACA ATTGCCAGTC 001840 001841 CTTTCCCGAC TGGAAGATGG CAACAGCCCT GCCCCATTTC CCCGCCGTAT TTATACTGGA CTTTAGAGAA CTGTGAAAGC 001920 001921 CCATCTGGAA AACACTCAAG GCAGGTGAGT GCCCCTCACA AACCCTGTGG AGAACACCAT CCTTCCCTCC ACCATCATCA 002000 002001 CCAGCAACAA ACGTTTGCTC AACCCACGGT GTGCAAGGCA GAGGGCCCGG TGCTGCAGGG ACAGAAAGAG GAATGAGGGA 002080 002081 CAAATGAACA TGATGGAAGG GAAGGGAAGG ATGTCTGTGT TCTCCAGGGA TTTGCCATCC ACCTGGGTGC TGGTCTGATG 002160 002161 TCCCTGAGTC ACTGAAGCAA TGCCAGCAGC ATTTTTATGG GCAGAAAGAT CAATGCCCGT AAATAGCAGG GCATCCTCCC 002240 002241 TGTCAAATAA AGGTGACCTA AGATTCTACC AGTTCGGGCT GAGCTCTGAG TCACCTATTT ATTCAAGTTA TAATTACTGA 002320 002321 GCTCCACTGC AGAGGCTGCT GGACACACCC CTATTTCCTA GAAATGGAAC TCTTTCTAGC ACCGTGCATG GCTGACTGGA 002400 002401 ATAAAACTAT ACCTCCCAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT077773_smProtein_719:871 |
Length | 51 |
Molecular weight | 5995.1947 |
Aromaticity | 0.14 |
Instability index | 60.4402 |
Isoelectric point | 9.84539794922 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.0406288641583 |
Amino acid sequence | MSKHVLFKMDPFYCIQILLNKMEWKIISAVLSALRKKKSQPFFSQKEYVT |
Secondary structure | LLLEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLEELL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |