NONHSAT078005
Revision as of 18:49, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078005 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5627 nt |
Genomic location |
chr2+:242844704..242850330 |
Exon number |
1 |
Exons |
242844704..242850330 |
Genome context |
|
Sequence |
000001 GAGCCTTCCC CGTGTGCGGC ATCACCCAGC TCTGTCCTTC GTGCCTCCCG GGAGCCCAGG GAGTCGGGGC CACCGGACGC 000080
000081 TGGACCTGAG AACCTGGACC CAGGCCCGGT CTGCCCGGGA GTTGGCAAGT GCTGAGCACT GTGTCCCCTT GCACGGCCAC 000160 000161 TCGGGGCCTC CACGCACCTA AAGGACAGCT CCTGAAGCAT CCTGGCCCTG CACTCACGGT GGCACGCGGG CGCCGTCCCC 000240 000241 GAGCCCAGGG GCCAGGCCCA GGGCCCTTCC CCGAAATCTG CCATGAAGGT GAACTCGGTT ACACTCAGGC CCAGGGCTCC 000320 000321 CGAGGCTGGT GGCGGCTGCT CCGCATGAGG CCTGCTGGCT CCCAGGGGCC GCCCTCCCTT GAGAAGGGGG TGCCCACTAC 000400 000401 GGCTGGGCCA TCTGCAAGGG GCCCGGTGAT CACATTATGG AGTCATTTTT GAACTGGGTT CTATTAACTA CTAATTAGTG 000480 000481 AGCCACAGTC ATGACATCCT TTGTAAGGAA AAATGTTCCT AACTGAAGCG CTCGCCCATG TCCGCGGTGA GACGCCTGCA 000560 000561 TGGGGCGGTC TCTGCTTCTC CCCAAGGACC CTCCTCGCCG CCCGCTCGGC TGCACCGGCA GATGGTGGCA GGGGACAAGG 000640 000641 ACGGCGCGGT GGGCCCCGCG CCCAGCTCAC CGCGAGTGCT GCTCCCTTCA CAAAACGCTA GAGAGACCAG CACCCTCCTT 000720 000721 GCCCCGCCCC TGCTTGGGGC CTCTCTGTGC TTGGAGAGGA GGCCCAGGCT TCCTCCTCTT CCTGGAGCGG GCGTGAGGAG 000800 000801 GGGTCTGCAG GCTCTGTCTC CCGGACAGAG CAGCCTGGAA AGTCCCGTGC TCCGGGGACG CCTGTCTTTG ACTCTGTTCT 000880 000881 CCTGGGCCGC AAGGCTGAGG CCCGAGTGCG GAGGCTGCAC CTGCTCAGCT CCACTGTGAC CTCTTGGTGC CGGGGACACG 000960 000961 CCTGCCCCCG CGCACATTGC CGCCCGGCCC ACCTCCTGTC TGAGCCCTCT CAGCAGACAA GGTCCTTGGT GCCTGGAGTC 001040 001041 ATCAGGACAG ATGGTGGAGC CCAAGTCCCT GTGTGGGGAG GGGAGGAGCA AGTCCTAGTG TAGGGAAGGG GTGAGTCCCA 001120 001121 GCGTGGTGAG GGGGTGTCTT TCCCGTCCAT GGTGCCCCGT CGAAGCTCCA CACACTGGAC AGGCCACAAG TTCTCATGGG 001200 001201 ACTCGGGCCC ATGCCTGGCC CAGTGTGGAC GCCCTACTGA AGCGGCATCC CAGGCCCCAG CAGCTCAGAC TCCCCCCAGC 001280 001281 TGCCCTCCCC ATGCCCAGCT TGATGGGTAC ACAGTGTTGC CCGCTAGTGT CCACGCCCTC CCGAGGGGTC CCTGGGCTAC 001360 001361 AGCAATGTTT GGTCTGAGTG AATGAGCCAT GGGGGAACAG ACGCCCCTGT AGCTGCAGAC CCCCTGCCAC AAAGCACAAG 001440 001441 GTGGCAGGGG GTGTCCCAGA AGGCCCCGCA GAGAAGGCAG CTTCGCACCA ACCTCGTGAG GCCTTGGGGG TCAGCAGCTG 001520 001521 GGCCAGGAGC TGACCTGGGA GGCAGGGAGG CAGGGATTAC CTCTGGAGCC ATATCTGGGG CTGGGACTTT GCCTGAGCCA 001600 001601 GGTGTTCTAG GAATGCACTT TAGCTGCAGA GTCCTTATCC ATCTGGCTCA GCGCTGGGGA GGGCAACAGG GAGTGGTGGG 001680 001681 GTCTGTGGCA AAGTGAGGTG CCGCCATGTC CACGGGCGGC TGGTGCTGAG CTCACAGCTG CTCTGGGCAA ACTTTTTCCA 001760 001761 TAGATGCCTC AAATCTGAAT TTTTAGGAAG CATATCCAGA TTTTAAGGTG TTGACTAACT ACTATTTCAC CTAAAAAAAA 001840 001841 GCCACTGAGC CGGCTCCCCC ATGTGGGCCG GACACAGCAT TGTACTAGAA TCCCAGCAGC GAGGGGGATC CCGCACTTCC 001920 001921 TGGGGGCCTG CGGGGGCTGC AGTGGGTGTC TGGGATTCCA GGGTGGGGGC GAAACCCTGC TTTTGAGGAG CCCTCAGATG 002000 002001 GGGGCGGGGA GGGAGCCATT CAGGGACGTC CTCCATCGCA GCAGGCAGGA GCTGAGTGGC TGCTGGGAAG GGTGAAGACA 002080 002081 TTCTCCTCTA CACTCAGGAG GCACACGGGG CTCTCAGATT AGACGGCACC GAGTGGGAAG GTGGTGGTTT CATGATCAAT 002160 002161 TTCCTGACCA GAGCCACCTG CAGAGGAATC TTTTTCCTGA ATACCATATT TTCTAAGCTA TTAGGAGCAC AGCTTGGCAA 002240 002241 TGACTGAGGG TGTCTGGACG GTGAGGTGTG CGCTGGGAAG CCTTGAGGTG CCGTCTGGTC TGGCGTGCCC CAAGGACACA 002320 002321 TGTGGGGAGG GTGCCAGGCC CTGAGTCTGT GGGTGTTGTC AGGAGGTGGC CCCTCTTTTC CTGGTTCTTT GCCTGCTGGT 002400 002401 GCTGGTCTGT GAATGCCCTC GGGGCCTCCT CCTGGAAGAG CCTCTTCCCT GGGCCCGCTG AGCTGCAGAG GCTGCAGGTG 002480 002481 CGTCTCTGCA TGTGGCTGCG CTTTGTGGGC TGTGTCCTTT CTCCTGCTGG CTGGGATTGG CTGCTGAGGC GCCAATCCTT 002560 002561 CCTCTGCCCA GATGTGGCTT GGTTCCGTTG GAGTCCAGTG TCAGAGGGCT GAGTTGGATG TTTCTAGATC AGCTGTGTCC 002640 002641 ACAGGGGCAC TGGCCTCCTC GTCACAGTCC CTTCCCCGGG CCCGTCACTG GTGCTGGGCA CCACACTTAG GCCTGGCCGT 002720 002721 CCTCTGCCCA GGAGAAAAGG GGGAGTGGGT GCTGGGAGTG TGCACAGGTG TGTGTGCAGG GCTGTGGGTG TGCGCACACC 002800 002801 TGCGTGTTTA ATCATAATAC AAAGTGGGCC GGGAACCTCA CCCTGAAGTG TGAAGGGCAG TGCGTCATTT AGAATCCTTC 002880 002881 TCTTTTTCTC CTTCTTGAGC AGCTGAACGT TGAGAGGGGC CCCGTCTGGT GTGGCCGTGT CTGGTCCCCC ATGCAGGCCC 002960 002961 TGCACCGTGG ACTCCCAACC TGCGGGGATC CGTCCCCAAA GACGCCACTA GTTCTGCCAG CCCAGGGTTT CCTGAGTGTT 003040 003041 TCCCGAGAGG CCCTGGTTGC ACGGAGTAAG TTCTAGTTTA GTCCTGGTTC GTTCTCCCCA AACGTCTCTC AGGAGCTGTG 003120 003121 TTTCTTCTTC ATGACCTTCC CCTTAGACCT GTGTCAGATC AGGGTTAGAG GTTGGTCTCC TGGCCTGTGT GGCCACCCTG 003200 003201 GCGCCCTCGA CGCTCTGCCA TGGGCTCCCT TTCTTTCATC GGAGGCAGCA TCTGGCCATA GTGAAACTGA GTGTGGGGAG 003280 003281 GGGGACGCAG AGCTCCCAGG TCCCAGCCCA CAGGTGCCTC GGTGGTGAAA TCCCCTGACA CACTGAGTGG GGCTTCCAGG 003360 003361 ACGGGGGACG GAAGGAAAAG GATTAAGGGG TTAGGTAAGT GCAAATATGG CTTTGAAGGT TTAAAATCCT TCACTCATGT 003440 003441 TGTGAGGGAA GAACAGGTAC TAGACTAGAA GCCATGTCTG GTTGCCCTTG AGGGACCCCT CAGCCAATGT GAAGACGTGT 003520 003521 CCAGGCAGCC CTGGGAGACA TCCCTGTGGG GGGGCCAGTG CAGGAAACGG ACCGCCGGGG GAAGCTCCTG TCATCCCAGG 003600 003601 GTGGGCCAGG CTGGGACTAC AGTCATGTGC ACAGCATGGC TGAGATAATG AGCAAGACTC CAAGGTCCAC CCAGGGGCCC 003680 003681 GATGGCCTTT AGGGAGACCT AGCACtgttg caggatcagg aggaccggag agagaccttg gagtgtacac aggaggatat 003760 003761 ctttatcatt gagtgcactc agacccagca gactcaatgt ccaaagactg ggcccagaac aaagacagcg cctgactttt 003840 003841 acacacactt cacaaaaggg ggtgggctag cttgaagcaa gcttacagtg gcgtgaaagc agggatacag aggcaggaca 003920 003921 aactcaggat tgcacatgac tgttgccaag caacccacat gtccgttatc taggttaacc tgggcacggg cttatcccat 004000 004001 aaccttcact atgttgccca ggtggccgta actcaggcct gctcagaggc tcatgacctt cactttactg cttagataaa 004080 004081 acaatgcttg aagtcaatag ttacagagaa caggaattta taaactcatt ccataaaaca aaggaaaatt tgtttttctt 004160 004161 ctccctatat tgagggagtg ctgggagagt ctccagagca cattagataa tattattatt aagacttttc ctgggtttgg 004240 004241 gctgtgcttg ttgctgcctc taggacaagt tagcctaata cgggaaagct tatttctctt tctttttaat tttatttttc 004320 004321 tttaatttcc cacctcaACA CGACCTGAAC GTGGCTTAGT CTGCTGCTGG TGTTTGTGGA gggctgaata gtgtccttag 004400 004401 gaaatatgtt caagccctaa cctgtgaaca cagacatttt tggaaatggg ttattgcaga tgttatgcat taggatgacc 004480 004481 tcatgatgga ttagggtggg ccctaaatcc aatgaccagc atgcttttaa gaaggggaaa tgtgtgcaca gacacacagg 004560 004561 gaaggtacgg tgaagccgga gggagagaag aagggacgcg tctacactcc aagTGCAGAG AGAAaaggtt cagggttgag 004640 004641 gctcctgaaa caagacggat tcaccagaga aaagcgaaca aatgtatttt agttttatgt gacttggagc cttcgtaagg 004720 004721 aaatgaagac ccagagccag gtggacctgt gtgtttgtgc tttggcttga tgaagagggg atggccgtgg ggaaacgtgg 004800 004801 atgaggacgg gaggctgtga tgtgatgggt gaactgggca cctcagcacg gcctgtgtgC CCGGGGgaga ggggataggt 004880 004881 gagcagggaa atgactgtgt tgactataca cagccaccac ctaaacctca gtgtttgctt tgtaattgag ctcacgcaag 004960 004961 caaagctatc tccagcgggg actctcttct aaagagcacg cacactttaa tttttacctg tcctcgaacc aaccctttgt 005040 005041 tcattataac agtgaaaaag atacccctgg gtggagatgt aagatgctaa tgagacacac cacctacaaa caagcatgtg 005120 005121 tgccgacgac caccagactg tgcttcctga taacacctct cccactttct ttttttttta aggtggggtc tagatctatc 005200 005201 cccagtctgg agtgcagtgg tgagatctca gctcaccaca gcctctgcct cccaggttca agcgattctc ctgcctcagc 005280 005281 ctcctgagta gctgggatta taggcatgcg ccaccatgcc cagctaattt tgtatttttt tttagtagag acgaggtttc 005360 005361 tccatgttgg tcaggctggt cttgaactcc cgacctcaga tgatccactc gccttggcct cccaaagtgc tgagattaca 005440 005441 ggcatgagcc cccatgcccg gctacctctc ccatcttctt atggatcatc gggtgagact cccataaagg cagcctccct 005520 005521 atggccggtc tctgctgtct caccctcatg acccaccctg agtcctttct cccttagggt ggcctgtcta ttctgcacct 005600 005601 cactttcaaa atactctttt ttttttt |
Predicted Small Protein
Name | NONHSAT078005_smProtein_1148:1384 |
Length | 79 |
Molecular weight | 8267.2331 |
Aromaticity | 0.0769230769231 |
Instability index | 59.2282051282 |
Isoelectric point | 7.80938720703 |
Runs | 11 |
Runs residual | 0.0073483427142 |
Runs probability | 0.0214385508503 |
Amino acid sequence | MVPRRSSTHWTGHKFSWDSGPCLAQCGRPTEAASQAPAAQTPPSCPPHAQLDGYTVLPAS VHALPRGPWATAMFGLSE |
Secondary structure | LLLLLLLLLLLLLEELLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLEEELLL EELLLLLLEEEEEELLLL |
PRMN | - |
PiMo | - |