NONHSAT083406
Revision as of 19:08, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083406 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1707 nt |
Genomic location |
chr22+:19435757..19437463 |
Exon number |
1 |
Exons |
19435757..19437463 |
Genome context |
|
Sequence |
000001 GTGGATCTAG GGTTGAATGA CCTCCCCAGG GAACGCAGGC TTGAAGTGGA GGCTGAGAAT GCAATCCGAG TACAGCCATA 000080
000081 GGCCGGTCAA AGGTATGGAG GCGGTGTGTA GCAGGGGTGA GCGGGGTAGG AGTGGCTTGG ATGTCTGTAG TTCTATTCTA 000160 000161 AGGGTGCGGG AGACATGTAA CATTTACCTT ATTCAttttt cgagacaggg tcttgctgtg tcacccaggc ttagtgcagt 000240 000241 ggcgtggcgt gttcatggct tactgcaacc tcaaactcct ggactccgaa cagctgggac caaaagcatg cacagcctca 000320 000321 ccaggctaat ttttaatttt tttttttttt ttttgtaaag atggggtctt gctaagttac ccaggctagt ttggcctcaa 000400 000401 gcgaccctct cactttggcc tcccaaagtg ctaggattat aggcggagcg ccagtgcctg gcTGGGACGT TTATAAAAAG 000480 000481 GAGCAATGCA CAAGAGGCAA CAAAGGCAAG TAAAGAGGAG GCTGGTGGGC TTGCAGAAAC GCCCTGCAGT ACCTATGCTG 000560 000561 CGGTTCTCCC ACTTCACTGA TAACAAATCC TCAGTATCCA CTGATACAAA TCCTGGGACT GCTGGGCCAG TCCCAGGAAT 000640 000641 GACACTGGGA CAGACTCCCT GGAGGTGGAT CAGAAAGCTG CAGTTTTACC AGGGGTCCTG CTGTTGAGGC AGCCGGCTCA 000720 000721 AGGACCAAGC CCAAATAAGA CACTGAGAGG AAGGCTGCAG GCCAGGGTGC AGGAGTAATG ACCAGGATCA GTGCTCCAAC 000800 000801 TGGCCCCACT GTGTCATTAA AAGGCTCTGC AATGGAATCC ATCCTGGTCC AGGCAGGGGA GTGTGCCTCC AGCAAAGGAC 000880 000881 CAGGCGTTTC ACTGCATACA CAGCAGGTGT TGCTTAGTGA AGACAAAAAC CCAGAGCCAG AGGTACTGTA ACATTCTTCA 000960 000961 TTATGCATAA AGTGACAGTC TGTTAGCTGA TGTGATCCTG CAAATGAAGG CTGTCTACCC ACCAAGGGTT TCTCCCTCTG 001040 001041 CTAGTAAAAC TGAGACTTTG TCAGTGGAGG CTCAGGTAAG TCCCCACAGT GCTCATGCCT TCCAAAACCA CGCCCATTTC 001120 001121 CAGTGATGAT GGTTTGTGCC ACAGGCCAAG TACTGAACAT CATGACACTC ATAGACACTC TTCACTGAAG ACGTGGATAG 001200 001201 ACCCTGGGGC CACCATTCTC TCCTCTCTGG AGTGTTGGAG GGGCCCTGAC CAGGGCAGGA CCCCCATGTC TGGAAGCAGG 001280 001281 GTTAGCCCTG GCTCATGGGG GACCCTGCTG GGCTTAGCCA TTGCCACCTA GGGATCAGGC AGCCTTGTTT CTTCCTACTT 001360 001361 TCTCCAGGAG AAGCCCCAGA GGGACACTTT TCTAATGGTG AGATGGAACA CGGAGCACCT GCCAACAGGC CTTCAGTTAT 001440 001441 GGTCAGAGGC CCAACCACCA GTCTGTGTTA GTACCTAATC AAACATTTAG ATTTAGGCTT TAGTTATTGC CTGTTTTTAC 001520 001521 TTGAAATTCT TGGCTTAGAA TTATTCCCAA TGGGGCCAGG CACAGTGGCT CATGGGAACA AATTTAAAAT AATCAGATTA 001600 001601 GCATGTCAAA AGATCTCACG TTATAGAAAG TGAAGATCTA AGACCAAATA AATACTGATA AAAAATACAG GCCAGCAGAA 001680 001681 GCTTGGATGA TTTAATAAAT TAAAATT |
Predicted Small Protein
Name | NONHSAT083406_smProtein_1094:1330 |
Length | 79 |
Molecular weight | 8378.2644 |
Aromaticity | 0.0384615384615 |
Instability index | 51.8756410256 |
Isoelectric point | 6.95367431641 |
Runs | 10 |
Runs residual | 0.00547217010632 |
Runs probability | 0.03112524289 |
Amino acid sequence | MPSKTTPISSDDGLCHRPSTEHHDTHRHSSLKTWIDPGATILSSLECWRGPDQGRTPMSG SRVSPGSWGTLLGLAIAT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLEEEEELLEELLLLLLLLLLLL LLLLLLLHHHHHHHEELL |
PRMN | - |
PiMo | - |