NONHSAT089464
Revision as of 19:24, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089464 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2412 nt |
Genomic location |
chr3-:46963238..46965649 |
Exon number |
1 |
Exons |
46963238..46965649 |
Genome context |
|
Sequence |
000001 AGAGGCCCAC TATGCTGGCA GTAGCTTGGA GGAGCTGGGA GGTGCCTGTG CCCTGGTCTT GGGAGCATAC ACCTGAGGTG 000080
000081 GGATGGAGGA AAAGCCACCT GTGGCTCTGG CTAGGCCGGG ACCCAGAGGA CATCCTCAGA GCCCAGGAGC CCTGGGATTA 000160 000161 TGTGAGAAGC CAGTCCTCAC TTTGTATGTA TCCAGGCAGC TCTCTGGTCT TGTAGTTATT GTCAGCATCC ATGCTTCCTG 000240 000241 ACTGACTGTG GCTGGCTGCC TCCTGCTGTC CCATTCTTGG CCTGTGGGGA ATGCTTCATC CTGGGAAACC CAGGCCCCTC 000320 000321 CTCCAGAGCT GCCTTTGCAG GGTCTTCACC TCTGGCTGGT TGCGGGCCAC ACAGAGGTGG GAGCAAGGAA GCCTGGGGTC 000400 000401 CCGTCTCTCC CTGGGGGCCA CGGTAGGCAG TGTCCCTGCA GAGTGGCAGC GCGTTTTCCA CAGGCCTTCT CTGTTTAATT 000480 000481 GCACCCTCTA GTGGAGGAGA AGGTGAAGGA GCAGCTGGAG GCCGCCAAGC CCGAGCCCGT CATCGAGGAG GTGGTGAGTG 000560 000561 CCTGGACCAC CCTGGCATCC TCGCTGCTTC TGTGTGTCCT GTTTCTCTTC GCCACTTGct ctccctctgc cccccattcc 000640 000641 ttctcgtcac ttctttattc ccttcccacc agcccctttg ctctcgtccc tctccttcct cctcctcttt ctcccatttc 000720 000721 cctccttctc gagcctgccc tcccccttgt cctGGGGTGG CCCCTCCACC CTGATGTGTG TCTCCTCCCT TCCCAGGACC 000800 000801 TGGCCAACCT CGCTCCTCGG AAGCCTGACT GGTGAGTGTT GCCCGTGCGT GGCGGGTGCA GGCTGACTCG GGGACTCTTG 000880 000881 GTGCCAGCAT GGGCCTGGGG CTTGGCCCTT CCTGCCGTCA CAGTGCAGAG ACTGGCAGTA CAGACATAGA GTTACACGAG 000960 000961 ATAGCTACTG TTGGAAACCA GTGCTGAGGA GGACATAAGT GGTGGGATGA GAGGGGAGTG ATGGAGTGGG GCTCAGGCGC 001040 001041 GGGGAGCAGC AGGCCCCTCA TGAAGGCCCT CCTGAGAGGT TGAGAGCCCA TCTGCTCCAG AGCTCCCATT TGAGCAAGGC 001120 001121 CAACCGCTGT CTTTGGGGGC CAGGAGTGGA GGGAAGGGCA GACACAGTTT TCTGTTCCTG TTCTACCACC ATAGCTTGTT 001200 001201 CCCTCTGGCC CTGGTTTCCT CCTCTGTGAA ATGGAGGTCG TCATCCTTCT TGCTAGGCTG AGAGAGAGTG GGAGAGAGGG 001280 001281 TGCTGTGGGC CGGGAGGCTT GTGTCTGTCT TCACCTTGAG CCGGAGGTAG AGCTATATCC CTCTCGCCTG ATTCTTGGTC 001360 001361 GAGTTAACAC CAGCTGTTTT AATTTGATGA AACAAAAGCA TGGGGCATAT GTCCTGGGAA ACCCAGAGCC AGAGAGAATG 001440 001441 GGCTGAGTGC TTGTGCACTT CTGGGTGCCC ACAGTGGAGG GGCTGGGCCG GTGGCTGGAG GAGGAGCAGG GCCCACAGTG 001520 001521 GGCAGGAGCA AGTCACTCCC TGATGGTGAC CAGAGGACCA GAGCAAGAGA GGGTCTCTGA GAAACCATCC ACCTTTGCCT 001600 001601 TAGCTCAGTC CCTTGTGTTG GGTGGGTTTG TGATGCTAGT CCCCCTGCCT CAGTGGGACA GGGAATGATG GTTTATGCTG 001680 001681 GGTTTCGGAG GGTACAGAAG GGGAATGTCC TGGCCTCTTC CCCAGGGCAG CCCCCTCCAG CAACCGAGCA TGACTCCTAA 001760 001761 TGCCAGAGGG CTGCAAGAGG GGAGGGGACC CAATGCCACA TCAGGCCAGC CTTCACCTTC CTGCTTCTCC CTGCCTCCCT 001840 001841 GCTCCAGGGA CCTCAAGAGA GATGTGGCCA AGAAGCTGGA GAAACTAAAA AAGCGGACTC AGAGGGCCAT TGCCGAGCTG 001920 001921 ATCCGTAAGT GCAGTGCCTG GGAAGGTGGG GTCCTGCCCA CTGGGTGGTG GCCCAAGCAC CGGGCCCCTC CCCACCCCTT 002000 002001 CTGTCTGCCA TCCATCCCAG GTGAAAGGCT GAAAGGCCAG GAAGACAGCC TAGCCTCTGC AGTGGATGCT GCCACCGAAC 002080 002081 AAAAGACCTG TGACTCCGAC TGAGGCATGC CCTGCCCCAC CACTCGCCCA TCAGGCCTGT CCTGCAGAGG ATGGTCTTGG 002160 002161 GCAGGGATGG GGGCTAGGCT TGCCATCACC TCCAGTTTGG CTTCTGAGCA GAGACTCCCT GCCCATCAAG TCTGAAACCC 002240 002241 CCATGGATGA GGTCAGCTCC TTGTCTGCTG GGTGGCCCCT GCCATTCTGA ATGGAGGCAG AACCAGCAAC AACTCTGGGC 002320 002321 GTGCCtgtgt ctgcacatgt ggatgtacat atgtctgtat atatgtatat atTTTGAACT TTCTAAAAAA AAATCTGGAA 002400 002401 ATAGAAACAA GT |
Predicted Small Protein
Name | NONHSAT089464_smProtein_11:214 |
Length | 68 |
Molecular weight | 8008.0513 |
Aromaticity | 0.149253731343 |
Instability index | 84.7925373134 |
Isoelectric point | 5.49725341797 |
Runs | 11 |
Runs residual | 0.0208642650621 |
Runs probability | 0.0452939570587 |
Amino acid sequence | MLAVAWRSWEVPVPWSWEHTPEVGWRKSHLWLWLGRDPEDILRAQEPWDYVRSQSSLCMY PGSSLVL |
Secondary structure | LEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLHHHHHLLLEEEEL LLLEEEL |
PRMN | - |
PiMo | - |