NONHSAT091112

From LncRNAWiki
Revision as of 19:31, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091112

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1619 nt

Genomic location

chr3+:108960354..108961972

Exon number

1

Exons

108960354..108961972

Genome context

Sequence
000001 AAAAAGAAAA AAGAAAAAAA CAAGTTCCAG GGGAAGAAGA AGGGTGGGGG AGGAGTGGAG AGAAGTACAG GGGCATAAAA 000080
000081 AGAAAGGAAA ACAAGCGTGT GTGCATAACG AGCCTGGAGA GACCTTTTGT GTCAGGCTCC TGTGAGACTT GATGCTCCTG 000160
000161 AGAAACCTCT TGGGAGCTCC TCCGCAGAGA AATGAGAACA GAACCCTTTC TAGAAGCTTT GAATTAACAG ATGAGTACAT 000240
000241 TGCAAAGAAA GGACCCTATT TTCTGTTTAT TTCTGTTCGT TTCCTGTGAC TGATTTTATT GTTCCTAATT ACACCATAAT 000320
000321 TATTAAATAC CCTCTGGACT TTAGTACCAA ACAAGAGACG ATCAAGAAGA ATGACTTACA GAGGAACTAA AGGATAACTT 000400
000401 CAAATTAATG TGTACTAAAT GTTTGGTTTA CAACAAATCA GAGAACATTT ATTATAAAGC TGCAAGATGC TATTGCAAAC 000480
000481 AGAGATAAAA GCTCTTAGCC AAAGAATATA GAGCCTGAAG CAGAGGGTAG ACTTCATGGC AAACTTGCAA AGAACTCAAA 000560
000561 AGCAGAAACA TAAAAGAACA CTCAGCAGAC CAGGGAGGAT ACAAGATGAT AAAGATACTG ATGTCAATAC CTTTAAAAAT 000640
000641 TGTAGTAAGG AAAACAAACT AAGCAaattt aatttaattt aatttaatgt aaAATGACAA AGATATTCTT GAAGATAAAT 000720
000721 TTAGAAGCAA TAATTTAGAA AAATAATAGG AGCAGATTGA ACACATCGTT AAGGAATTTG GAGGAAAACC GGCCAGAAAA 000800
000801 CTTAAGAGTT GGAAGGAAAA GAACCAGATG GGACTTTTCT GTTCTGTTAA TCTTGTAGTG GGAGAATGAG GCTACTGCTC 000880
000881 TGTGAAGACA GGAAATGAAA ACTGAAGGAT TTCAGTCTGG AGTGAATAAC GTGCAAGAAG ATAGCAGGAA AAAAAGTGAT 000960
000961 AATCTAGTGA TATTCTGTTT TTATAAAGCA CATACTGATG CCATCTTTGC AAATCTTAAC AAGAGTAATT TTGACATAGT 001040
001041 CTTCTGGATT TATGAGGGAA AACATTCTTT CAAGTGCTCT TAGTATCCAT GATATTTGAC CACATGCCAA GATTACCCAT 001120
001121 ATGCTGTATA AATAATTTAG TGAATGTTCT AAGCAAAAGG CATTCTAGAA TTTTCCAAGA GTTGGAGAAC ATCACTTAAA 001200
001201 GATGAAGGCC AGAATAGGAC ACGTGACATA GCAAAAGACA TGGAGGTTAT CAAAATTGAT CCAGGTTGTT TAGACTCTGA 001280
001281 ATAATCAAGA CAGGTTCATG GCACAGAGTG CAGTGGAATA ATAGCACTCC AGGTGAAAGT TTTGACTAAA CATGCTCAAG 001360
001361 TATTCAGCTG AAGGAAACTT GATGAAACCA CCAAATTAGT CAGTGAGCTC CAGGAGACTC AGAGCATCTG AGCATCAGGC 001440
001441 CTGCTCTCAA CATTATCTGT CTCCGATGGC CTCTTACAGA GCCATGTATC TTGCTGAACA AGTGACCAAC AGTCTGAAAA 001520
001521 ATTGTACAAT TCCAAATTAT AAGCATGTAT GGAGTTGAAA AAGCAATGGG GATTTCCATT CTTTCCTCCA ACACTGAATA 001600
001601 CAACTTTGTA GCTTTAACA
[back to top]

Predicted Small Protein

Name NONHSAT091112_smProtein_1088:1198
Length 37
Molecular weight 4296.073
Aromaticity 0.0555555555556
Instability index 65.9222222222
Isoelectric point 7.86944580078
Runs 5
Runs residual 0.0415695415695
Runs probability 0.0255431902491
Amino acid sequence MIFDHMPRLPICCINNLVNVLSKRHSRIFQELENIT
Secondary structure LLLLLLLLLLLEELLHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -