NONHSAT091112
Revision as of 19:31, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091112 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1619 nt |
Genomic location |
chr3+:108960354..108961972 |
Exon number |
1 |
Exons |
108960354..108961972 |
Genome context |
|
Sequence |
000001 AAAAAGAAAA AAGAAAAAAA CAAGTTCCAG GGGAAGAAGA AGGGTGGGGG AGGAGTGGAG AGAAGTACAG GGGCATAAAA 000080
000081 AGAAAGGAAA ACAAGCGTGT GTGCATAACG AGCCTGGAGA GACCTTTTGT GTCAGGCTCC TGTGAGACTT GATGCTCCTG 000160 000161 AGAAACCTCT TGGGAGCTCC TCCGCAGAGA AATGAGAACA GAACCCTTTC TAGAAGCTTT GAATTAACAG ATGAGTACAT 000240 000241 TGCAAAGAAA GGACCCTATT TTCTGTTTAT TTCTGTTCGT TTCCTGTGAC TGATTTTATT GTTCCTAATT ACACCATAAT 000320 000321 TATTAAATAC CCTCTGGACT TTAGTACCAA ACAAGAGACG ATCAAGAAGA ATGACTTACA GAGGAACTAA AGGATAACTT 000400 000401 CAAATTAATG TGTACTAAAT GTTTGGTTTA CAACAAATCA GAGAACATTT ATTATAAAGC TGCAAGATGC TATTGCAAAC 000480 000481 AGAGATAAAA GCTCTTAGCC AAAGAATATA GAGCCTGAAG CAGAGGGTAG ACTTCATGGC AAACTTGCAA AGAACTCAAA 000560 000561 AGCAGAAACA TAAAAGAACA CTCAGCAGAC CAGGGAGGAT ACAAGATGAT AAAGATACTG ATGTCAATAC CTTTAAAAAT 000640 000641 TGTAGTAAGG AAAACAAACT AAGCAaattt aatttaattt aatttaatgt aaAATGACAA AGATATTCTT GAAGATAAAT 000720 000721 TTAGAAGCAA TAATTTAGAA AAATAATAGG AGCAGATTGA ACACATCGTT AAGGAATTTG GAGGAAAACC GGCCAGAAAA 000800 000801 CTTAAGAGTT GGAAGGAAAA GAACCAGATG GGACTTTTCT GTTCTGTTAA TCTTGTAGTG GGAGAATGAG GCTACTGCTC 000880 000881 TGTGAAGACA GGAAATGAAA ACTGAAGGAT TTCAGTCTGG AGTGAATAAC GTGCAAGAAG ATAGCAGGAA AAAAAGTGAT 000960 000961 AATCTAGTGA TATTCTGTTT TTATAAAGCA CATACTGATG CCATCTTTGC AAATCTTAAC AAGAGTAATT TTGACATAGT 001040 001041 CTTCTGGATT TATGAGGGAA AACATTCTTT CAAGTGCTCT TAGTATCCAT GATATTTGAC CACATGCCAA GATTACCCAT 001120 001121 ATGCTGTATA AATAATTTAG TGAATGTTCT AAGCAAAAGG CATTCTAGAA TTTTCCAAGA GTTGGAGAAC ATCACTTAAA 001200 001201 GATGAAGGCC AGAATAGGAC ACGTGACATA GCAAAAGACA TGGAGGTTAT CAAAATTGAT CCAGGTTGTT TAGACTCTGA 001280 001281 ATAATCAAGA CAGGTTCATG GCACAGAGTG CAGTGGAATA ATAGCACTCC AGGTGAAAGT TTTGACTAAA CATGCTCAAG 001360 001361 TATTCAGCTG AAGGAAACTT GATGAAACCA CCAAATTAGT CAGTGAGCTC CAGGAGACTC AGAGCATCTG AGCATCAGGC 001440 001441 CTGCTCTCAA CATTATCTGT CTCCGATGGC CTCTTACAGA GCCATGTATC TTGCTGAACA AGTGACCAAC AGTCTGAAAA 001520 001521 ATTGTACAAT TCCAAATTAT AAGCATGTAT GGAGTTGAAA AAGCAATGGG GATTTCCATT CTTTCCTCCA ACACTGAATA 001600 001601 CAACTTTGTA GCTTTAACA |
Predicted Small Protein
Name | NONHSAT091112_smProtein_1088:1198 |
Length | 37 |
Molecular weight | 4296.073 |
Aromaticity | 0.0555555555556 |
Instability index | 65.9222222222 |
Isoelectric point | 7.86944580078 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0255431902491 |
Amino acid sequence | MIFDHMPRLPICCINNLVNVLSKRHSRIFQELENIT |
Secondary structure | LLLLLLLLLLLEELLHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |