NONHSAT091291
Revision as of 19:31, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091291 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS),antisense |
Length |
1943 nt |
Genomic location |
chr3+:114341289..114343219 |
Exon number |
1 |
Exons |
114341289..114343219 |
Genome context |
|
Sequence |
000001 CCTCGTGCCA GCCCTAATAA AACTCTGAGA CTATTTTCTA TCACAATGAC AGCTGATGAA TTTAATGTGC CTCACAAACT 000080
000081 ATAGGAATTG TGATAGGAAG TTGACTCTGT CCTAGAGGCC ACTGACAAAC CTGATAAGGC TGTAGCAGGG GTCAGTCTCT 000160 000161 ATAGGAAACT TGGGCTATAT GAGCATGTAT GAGTTCTGTG GTTAAGAATC TGAAGCACTC AGTATAGCAA ACAAAATTCC 000240 000241 AAAGCTGAGT ACCAATGTAA TACGCTGGAT CGCTGTACCT ACTTGGACAA GAGTACATGC AACAGGCACA TACAATATAC 000320 000321 ATCTGGTTAA ATGTAAAATC ATCCATTGCT AAAGCATTTT AAACTTCTAG GAGAAATCTA CTGGCAATGT GTTAACAGCA 000400 000401 AGGACAACCA AAACAATAAA ATAACATCTC TTTCCTAAAA TTTAAGAACA TCAAGTAAGT GCCCCTTAGG CTGGGTTGTG 000480 000481 ATTCCTGGAA GTTTCAGCCT ATGAGAACCA TATTGGCGAC ATCAAAGACT CCCCCTCTTT CCAAAAAGCA ATTCACTTCA 000560 000561 GATGCTGCCA CACAATCGAA TGCTTTTATG GCCACCATGT TTTTTTGGTT TTTGTTTCGT CTTTTGTTTT TTCCATGCTT 000640 000641 AATGAACATG CCAGATTCTT GAAATAGAAA GAAGATGAGA AAACCCAGTA AGATGGAATA CCTCTAGAAA AGAAACTAGG 000720 000721 CAGGGACCTG ATGGTAAAGG ATAAAAACAC ATTCCAACAG GAATTCTACT TTTAGGGAGA GTATGAGTTA TTAAGAAGGA 000800 000801 TGTGGAAGGC ACATTTTGGC TATGAAAGCT GGTCCGTGGA CTCCTCTGCC AGTCTCACAT CAGACAGGAT GCAACCATCC 000880 000881 CCACTCCATT CCTTCGACAA CTTCCCAGAG CACATTCAAT CAGTGTCCCT TAAATTGAGG ACAATACTAT ATTTGGGTTT 000960 000961 AATACTGTGA GGACAGTCAT TTAGTTTTCC TGTGGCAGGA TGATAAATTT CCTGGGAACC AAATAAGGAT TCTCATTGCA 001040 001041 TTCTTCTGCT TGATACTATG AATGCAGAAG AATAAAGAAG AGGGTGTGAC AAATCATATT TTCCAAAGGT CGGGTGTGGG 001120 001121 GAGGTTCCCT AACGTTTAAA AGCAACCAGT TGTTAGCAAA GTGATCTTTA GAACAGTATT AGCAAGAATG TTTGCTCTAC 001200 001201 ATCCACTATA GATATTCTCT CCTGCTTAGC TAGGCATGTA AGTACTGTGA GCATAATGTA AATACTCAGA ACAGAAATGC 001280 001281 ATGGAAAGCT GGTGGAGTGA AACTCCAAAT GAACAATTAA TTCCACTTTC ACTTCCCCCA TCTACCTCCC TGAATACTAC 001360 001361 CTCCCTGCCC CCACTCACCT ATCTTCCTCC CCCCAACAAG CATGTTTGCT AGGCATGTCA AGGCTGACAT CCATCGGTGG 001440 001441 CAGTATGAAA CCTATGCCTA CAGGCTGCTC CTGAGCATAG CCTCAAGGCT CTGCCATTGT CCGTAGAGTG CTCTAAGTTG 001520 001521 TGCCCGCTAA AAATCTTCAT CATTCCATTT GACTGTTTGG TAGTATTTCT TTAATTGTAT TTTTTGTTTG TTTGTTTTAA 001600 001601 AAACACCCTT TATTTCCTGC TTGCCTTAGA GACACCAAGA ATAAAATCCT TGACACATCA AATTCTGGAA CCTCACCACT 001680 001681 CACCAGGACT ATGGTTCCTG ATCCAAGGAG TGACGACTGA GAATCAGCAC ACAGTCTCTT GAGGGTGTCC AGGCCTGGCT 001760 001761 GTTAAGCTCC CTGCTCTGAT TAGTTTGTCG AGTTCACAGT GTTCCAGAGT GCTGAAGCAC AGAAATTAGG GAGGGGAGGT 001840 001841 GGAAGGAAAA TCACTGGAGC CTCTTACGAT CTAACTTCCA CTAACTGGGA GGAAATGTCT TATAAATAAA CAACAGTAAG 001920 001921 AGAAACAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT091291_smProtein_500:661 |
Length | 54 |
Molecular weight | 6130.2286 |
Aromaticity | 0.169811320755 |
Instability index | 44.2377358491 |
Isoelectric point | 9.78204345703 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0350140056023 |
Amino acid sequence | MRTILATSKTPPLSKKQFTSDAATQSNAFMATMFFWFLFRLLFFPCLMNMPDS |
Secondary structure | LEEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooo |