NONHSAT091632
Revision as of 19:33, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091632 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2041 nt |
Genomic location |
chr3+:125635444..125648867 |
Exon number |
5 |
Exons |
125635444..125635660,125637707..125637769,125639668..125639748,125643809..125643958,125647338..125648867 |
Genome context |
|
Sequence |
000001 AACACTGCGG CCCCGCCCAC GTCATGGCGC CCGAGGAGAA CGCTGGGACC TAACTCTTGC TGCAGAGTTT GCAGCGCCGC 000080
000081 TTTCTGGCGG CGCGCGCGCT GCGCTCCTTC CCCTGGCAGG TGGGCGGCGG GGCGAGCGGA GAGGCCCGCA GGGCTCGCGG 000160 000161 GAGTCCAGGG GCAGACGGGA TGGGTCTCCG TGCAGAAGCC CCCGACACGC CCGCCACAGC TTAGAAGCAA AATTAACAGA 000240 000241 CTCATCAGAT TCTGAGCTTC TGCGGGATAT TTTGCAGAAG ACTGTGAAGC ATCCTGTGTG TGTGACGCAC CCGCCGTCAG 000320 000321 TCAAGTATGC CCGGTGCTTT CTCTCAGAAC TCATCAAAAA GACGTGCTGT ATTGCCCAGA AGCCATCGTG TTGCTGGTCG 000400 000401 GGGTCCTGCT GAGGCTGGCT GCCTGCCGGG AGCACCAGCG GGCTCCTGAG GTCTATGTGG CCTTTACTGT CCGCAACCCA 000480 000481 GAGACATGCC AGCTGTTCAC CACCGAGCTA GGCCAGGCCA GGATCAGATG GGAAGTGGAA CCTCGTCATG ACCAGAAACT 000560 000561 GTTTCCCTAT GAAGAGCACT TGGAGATGGC AATGCTGAAC CTCACACTGT AGGACTCACA CACGACTCCA ATGGGATTGT 000640 000641 GAGAATCAAG TCACTCTCAA GGGAAGAGGT TTCATATGGG AAAGCTGATA AAACTTTCAC TGGACTGGAA TGTTTGGAGA 000720 000721 ATGTTAATTT CCAAATCAGG AACTACAAAC TGCCCTCTAA TAAGACATCG GCTATCTAAG CGTGTGGGTG CTCCCTTTCT 000800 000801 GCCAGCAGTT CTGGTTCTTA AGGAAATCGC CATCACTCAG ACATGAAAAC TCTGGCTCCA AAAATAGCAT TTTCTTTGTG 000880 000881 CAAATAAAAA CGTGTGTATC AAGTATGTGG ACACACTCGG TTCCTCACAA AGCCAAGCCT GCTGCAGCTG CCACATCCCT 000960 000961 GGACACACTT GGTTCCTCAC AAAGCCAAGA CTGCTGCAGC TGCCACATCC GCGGACACAC TCAGTTCTTC ACAAAGCCAA 001040 001041 GCCCGCTGCA GCTGCCACAT CCCTGGGCTT ACGATGCAGC AGGTGCTTTT TTCAAGACAG GAATCAAAAT GTTAGGAACA 001120 001121 CGGCAGAAAG GTGACACCTG GAGACCAAAC GCAGGATAAG GAGTACTGCA GAGGTCACAG GGAAGTCACA GAACAGTAAT 001200 001201 ACGCTAGCAG GGGCATGGGG CATGAAGAAC AGAAGAAGAG AGGAAGTGTT TCCGAGCCTC CGGAAAAGAA ATCAGAGCCA 001280 001281 AGCACAGCTT CCCGGGTCAC AGAACCAATT CATTCACCAG GCGGCACCAC TGCCGTCATT TCAGCTTCTG GCCACTGGGA 001360 001361 GGCGCTGCTC AAAAGGGTTT GCCCTGAGAC TCCGAGAAGA AGCTGCGGGA AGGACAGCAG GGGTCCCGGG GTTTTAGCCT 001440 001441 CTGGCCCAGG AGTTGTATGT CCATAACCAA AGGGAGCACA GTCTGCACCC AGCTCTCATC CCATCGGAGC TGCTGCGACT 001520 001521 CCCGCAGGTT CTTCCAAAAC TGGTTTAGCT TGCCTGCAGG ATCAGGAAAG TTTGAGAAAA GCATCTGCAA AAAAATAAAG 001600 001601 AGCAGAGCTT ACCTCATTGC CTGTCCCCAC CCCATCCCAG GTCACCACCT GGCTGACCCC AGGTCCCCGA CCCAACAACA 001680 001681 ACCCCTCCCA AGTTCCTAAC TCTCTCACTT GGACTCGAGA CTCTTCACGC CCCAGCAGCG CTCCGCCTCC AACTTGACAT 001760 001761 CATGCTTTCT GGAAACTTCC CCGTATGTCC CACTTTCCCA CACTTGGTGC CCTGGAGCAC CTCCCGGCCT CTAACGTGCT 001840 001841 GTATGTTCCC CTGCGAGCAC CCTCCTCTTG GCCTCTGGCC AAGTCCCACC CATCTGTGGG TAACAAGGGG GTGTCGGTGT 001920 001921 TCTTTTCAGC CTTGCTAAAC TCTCTGAATc aaggatcaca aactacagcc tgcaggccaa atccagccca cagcctgtgt 002000 002001 ttgtaaataa agttttattg gaacaaagcc acacccctta a |
Predicted Small Protein
Name | NONHSAT091632_smProtein_1214:1465 |
Length | 84 |
Molecular weight | 8658.6737 |
Aromaticity | 0.0120481927711 |
Instability index | 75.334939759 |
Isoelectric point | 8.98675537109 |
Runs | 11 |
Runs residual | 0.00749665327979 |
Runs probability | 0.0341330635448 |
Amino acid sequence | MGHEEQKKRGSVSEPPEKKSEPSTASRVTEPIHSPGGTTAVISASGHWEALLKRVCPETP RRSCGKDSRGPGVLASGPGVVCP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLEEEEELLLHHHHHHHHHLLLLL LLLLLLLLLLLEEELLLLEEELL |
PRMN | - |
PiMo | - |