NONHSAT093248
Revision as of 19:39, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093248 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8066 nt |
Genomic location |
chr3+:172135391..172143456 |
Exon number |
1 |
Exons |
172135391..172143456 |
Genome context |
|
Sequence |
000001 gatctgccca cctcggcctc ccaaagtgct gggattacag gcatgagcca ccgcgcctgg ccattagatt tttttttcta 000080
000081 agagttgttt gaactcctta tatattctgg ttattaatac tttgtcagat tagtagcttg aaaacacttc ctcccattct 000160 000161 atgggttgtc tcttcacttc gttgattgtt tccattggtg ggcagaagct ttttaacttg atatgatccc atttgttcat 000240 000241 ttttgacatt gtcgttgttg cacattgttc attgttgcac aggcaacagc ctgtgcttgt ggggtcttac tcaagaaatc 000320 000321 cttacctact ctaaagtcct ggcaagtttc cccaatgttt tcttttaata gtttcgtagt ttgaggtctt acattcaagt 000400 000401 tgttaatcct ctttgatttg atgtttttat atggtgagag atggggtcta gtttcattct tctgcatatg gatatccagt 000480 000481 ttttccagca tcatatattg aagagactgt cttttcccca gtgtatgttc ttgacagctt tattaaaaat gagttcactc 000560 000561 ccgggaggca gagcttgcag tgagccgaga tcatgccact gcactccagc ctgggtgaca gagtgagact ccgtctcaaa 000640 000641 aaaaaatgag ttcactctag gtgtgtggat ttgtttctgg gttctctgtt ctattccatt ggtctatgtg tctgtttttg 000720 000721 tgccagtacc atgctgtttt ggttactata gctctatctg tagtataaag tcaggtaaca tgacttctcc agcttgttct 000800 000801 tttgctcagg atagtttggc tattctgggt cttttgtgat tctatataaa ttttaggatt gttttatttg tgtctgtgtt 000880 000881 gaatgtaatt ggtattttga tagggattgc attgaatctg tacactgctt tgggtagtat gaacatttta ataatattga 000960 000961 ttcttccaat ccatgaacat ggactatctt tccatttttt ggtgtccctt caatttcttt catcagtgtt ttatagtttt 001040 001041 cattgtagag aacttttact tctttgcttc agttaattcc taggtatttt attttatttt gtaactattg taagtgagat 001120 001121 tactttattg atttgttttt cagatttttt gctgtttata taaatgctac tgatttttgt aagttgatct tgtatcctgc 001200 001201 aacttcactg aatttgttta atcagatcta ataatttttt ggggaagtct ttaggttttt ccaaatataa gatcatttca 001280 001281 tctgcaagca aggataattt gacattttcc tttccaattt cgaaacactt tatatctttt tcttgtctgg ttgctgtagt 001360 001361 gaggacttcc actactatgt tgaataacac tggcaaaagt gggcatcctt gttgtgttcc agatataaga ggaaaggctt 001440 001441 tcagttcttc cccattcagt atgatactag ctgtagatct gtcatatatg gcttttatta tgttaaggta tattccttct 001520 001521 atacccagtt tttttgaggg tttttaccat gaagggatgt caaattttat caaatgcttt ttcagcatca attgaaataa 001600 001601 tcatatgatg tttgtccttc attcttttat atgatgtacc acatttattg atttgcatat gttgaaccat cgttgcatct 001680 001681 ctggaataaa tccctggaat gcatccctgg aataaataag ttcatgatga atgaactttt taatgtgttg ttgaattccg 001760 001761 tttgctagta tttttttgag ggtttttgca tcaatgatta tcagggatat tggcctgtag ttttattttt atgatgtgta 001840 001841 tttgggtggt tttgatatca gggtattact ggcctcatag aatgccaata ggtagttttt caacacttat ccctctctct 001920 001921 ctctctcccc actctagtaa tccttagtat ctgttttctc acctttgtgt ccatgtgtac ttaaggagtt tagctcccac 002000 002001 ttatgagtga gaacatgcag cacttggttt tctgttcctg cactaattca cttaggataa tggcctccac ctacatccat 002080 002081 gttgctgcaa aggccagaat tcattccttt ttatggctgc atagaattcc agggtatata tgtaccaaat ttgctttatc 002160 002161 cagtccacta ctgatgggta tctatgttga tttgatgtct ttgatattgt gaatagtgct gtgaggaaca catgcataca 002240 002241 tgtgactttt tggtagaata aattatattc ctttgggaat atacccagta atgggattgc ttggttgaat ggcagttcta 002320 002321 agttctttga aaaaacacaa attgctttcc acagAACATA GATCTTACAT TTTTTCCTCC CAGTGCTTTC CTCTCAGTAT 002400 002401 TATCACCTCT TTTAACAATA CAACACCTTT TGGATGCTCT ATCCATCTTG AAAACACCTG TATCAGCAGA CAGCAGAATA 002480 002481 TGCTAGGAAT CATGAAGCAA ATTAAATGTC AAGCAGAAAT GAGTCAATGT GCCCTGTGTT TCATTAACAC CACCCAGTGA 002560 002561 AGTTACAAAT TCTGCCTGAA TTGAAATGTA AGCCACATCA AGATCAGAGG GCCTGTGCTT GGATCTGTTT TCCTCCTGAG 002640 002641 TTATGAAAGG CTGAGTTGTT ACTATTGAAC TAAAAAAACA AGGCTATCCT TGAGCCACCA GTGTCATTTT CAATCTTATC 002720 002721 TGGCCAGTAC CTTCTCTGTT TCTTCTGTTG CTCCCTTGTT ACTAGTGTCC AAAGTGGGTA GCCTGTTTTT GTACTGAAAG 002800 002801 AGAGCAGGAT CTTCATGCTC AAACACTCTA CTCACTTCAT TACTATTTCA TTACTGAATG TCTTTTCTAA TATTCCTAAA 002880 002881 CTATACCCCT AATCTTGACA TGAGCGATTA GTACAATTTT TATAAAAATT GTCTTCCACA AGATCATCCA CGGGTGGGTG 002960 002961 ATGCCTAAAG ATGATGATGC ATTTTCTTTC ATGCACTAAT TACTGCAAAA AAAAGCAGGA GCCCATGTGA GTCACCTGAG 003040 003041 ACCAGGGTGA TGATTTTACA GTCAGCAGCA GCATCCAACT TCCCCTCACC TCATTTCCAA ATCCTACTGT TTTTTTTTCC 003120 003121 CTTCTCCTCC AATTTGTTCT CTACTTTTCT GTGCCTGCAA GGTAACAGTA GATTTTAAAA TGGGCTGTTA GAGTAGTGAG 003200 003201 ATATTATTGT GAAACAGCAA ACATACATTA TTTGATAATC ATAAGCAGAA GAGGTCTTGG GGAACAGTCA TATGATTACA 003280 003281 AGCCTTATAT TTCACAAGCT GAAGATTTGA GGACAGAATA TCACAAACAA TGTGAGTTCT GGAGGTTAGT TCTGATTTAT 003360 003361 CTATTTTGCT TATGTCAAGG TTAGTCTTTA TGTGCTTCCA GTTCTCCAAA GGCGTCCATG GCTCCTGGAT ACCAGATTTC 003440 003441 CTATTTTATT TCCTAAATTT TAGGTTTGAG GTGAATGGCA TAGTGGCTAA GAGCAAGCAC CTGGAAGCCT ACTGAGGatt 003520 003521 tgtgccctct ctttttatcc taatcggtat gactagaaac ttttcaactt tttggatttc ctcaaggaat tatagtttca 003600 003601 ctgagtttct ctgttttttt aaattgttgt ttaattcctg ttttgatctt tactatttca tttattccac tgactttaag 003680 003681 tttaatttgc ccttttctct agtttcttag gtcgaagctg agatcataat ttagaccttt ctttggtcaa gtataggtat 003760 003761 tttaggctat acatcttcct ctatatactg cttcagtggc atcccacaaa ttttgaaatg tgcttacctt gttttttagt 003840 003841 ttgaaatgct ttgtaatttc tctttgaatt tcttctttga tctatgggtt atttggatgt accttatcta atttccaaat 003920 003921 atattgggat tttccacaga tttttctgtt attgatttct aattcaattc tgttgtgttt agagaacCTG CTCTAAGGGG 004000 004001 AAGACAGCAA AGCATTAATT GAAGGAGATA AATTTCTTCC TTTCCTTTTC AAAAcaatgt gtttaaggca gaaaaaaacc 004080 004081 ttgactaaga gtcagaagct ctgctatcta gtctcagctc ctccacaatc agctcagtgg cctttcacat tttccttcaa 004160 004161 aatttttcag tctgaaatgc cctttcattc atcagtagac agtcatatgg cttgaacact cagttccttc aggtctGCAC 004240 004241 TTTGAAAGAA AATAAAACAA GATAAGGGGA AAAGGAAGGC ACTATATTAC AGAGGCTGCT TACAGAAGGC TTCTCTCTTT 004320 004321 TTGAAATTGG ATAGtgacaa tttataattg tatgtattta tggggtacaa aatgatatat gtataccatg tggaattact 004400 004401 gactcaaact cattgaaata tctatcaatc acctcaaata tttatcactt actcctcagg tctaactgaa cattgtgttt 004480 004481 tttgaccaac atatgccatt cctcccactc cccagactca agtaagcacc attctgtact caacttctat gtattcaatt 004560 004561 ttttagcttc cacacgtaag tgagatcatg cagtatatcc tttttgtgcc tggctcattt catttagcac aatgtactgc 004640 004641 aggttcatac atgttgtcac aaaggacgta atttcccctt ttcaagactg agtaatattc catcatgtgt ttataacaca 004720 004721 tttttaaaat ccattcatct gttgatggat acttaatttg attccataac tgggctattg tgaataatgc tgcaataaac 004800 004801 atggaagtgc agatatttct ttaacatgct gatttcaaat ccttggctat atacccagaa gtgggattgc tggatcatat 004880 004881 gacaattcta tttgtagttt ttgagaaact ccatactgtt ttccatagta gcagtggtaa tttacatttc caccaacagg 004960 004961 gtgcaagggt tcctttttct gcacattctt gccaacactt gttaaatttc atctttttgt taatagccat tctgacatgt 005040 005041 atgagataat atctcattgt ggttttaatt tgcatttctt taatgattag ggatgttgag catttttaat gtatctgttg 005120 005121 accacttgta tatcttcttt tgagaaatgt ctattcatgt cctttgacca ttcttaaatt gggttgtttt attgctattg 005200 005201 ggttacttga gttccttata tatttgggat attaaccctt tgccagatgt atggtgatat ggtttgactg tgtccccacc 005280 005281 caaatctcat ctttaattgt agttcccata atccccacgt gttgtgggag ggactcaatg ggagttaatt aaatcacagg 005360 005361 gggcagttac ccccatgctg ttctcatgat agtgagttct cataagatct gacagtttta taaaggaatt ttcccccttt 005440 005441 gcttggcact tctccttcct gctactatgt gaaggacatg tttgcttccc cttctgtcat gattgtaagt ttcctgaggc 005520 005521 atccccagcc ctacaaacct gtgagtcaat taaacctctt tcctttataa actacccagt cttgagtatt tctttatagc 005600 005601 agtgtgagaa tggactaata catatggctt gcaaatattt tctaccattc cataagttgt cttttcagtc tgataattgt 005680 005681 ttctttgctg tgcagaagac ttttcatttg atgtaatcat atttgtcttt tgttgttgtt gttgttgtct gagcatttgg 005760 005761 tatcaaatct aaaaaattat tgcctagacc aatgtcatac ggttttAGCA AAGGTTTTTC TTatatttga gcaaatagtt 005840 005841 gaagcaaatg agggttcaag ttatatgaat atctcttaat gaatgaaaga gaatttcagg ctgaaaaata gagaaggaaa 005920 005921 gaaaataaca tgaaggccta tcagagaggg ttaagtaaat tatagcctat acatttaaga gaaaactatg cagacattaa 006000 006001 gaaggttgat ctatattaat actcaatagc atagaaagat ttctttaata atttcttgag ttgaaaacaa gcaagtgtat 006080 006081 aattttattc tatttatata aaAgtgtgtg tgtgtgtgtg tgtgtgcgtg cgtgcatgcc tgcatgtttg tgtgtgtgGA 006160 006161 GGCAATGTAT ACATAGAGAA ATATCTAGAA AGATGGTTAT AAAATGTTCA TAATGGTGAT CTATTAGACA TACACAAAAA 006240 006241 TAAAGATGAT TGAATAAtat ttatagcctg tctgtctcac caaaacataa actctatgaa aacaggaact tagctttgtt 006320 006321 cactacttca ttcctactat ctagaTACAT AATGAATGAA TCAGCAAAGG AAAGAAGAAA ATACAGGGCC TATACATGGA 006400 006401 CCAAATAATA GCTCAGATTA CTGGAGTTCA AAGGCATGCA GGGGAGCAAA GGAGATAACA GTAGATACCT GAGCAGATCT 006480 006481 GATTGGGCAG AGCTTTGAAT CCCAGCATAA ACCTGGACTT CATGCTTCAG GAAATGGGTA GATATTGCTC ACTGAGATGA 006560 006561 GGAGGTGGAG GATGGATTTT CTTTCTTTTT TTTTTAAGTG TAAGTATGGA CTTTATTTTT TTTAAAAAAA GTATTTTGAG 006640 006641 AACTACAAAT TATGAAGTAA AATCAGATCA CTATGTAGAA ATCTAGTGAA TACATTTGCC TGTGAATGAA AACTTTATCA 006720 006721 AAGTTATTCC TTTAACAAAT TCAACCCATT CACAATATTA AGTTATAGTA TTCTTTTTAA GGTTACTATA CCTTTATTTC 006800 006801 AAATTATATG ACATGTTATT CCTTCAAAAT GAACTTTTAA ATGACAAACT TTTGGCTCAT AAGAATGGCA CCTTCAAAAG 006880 006881 GGGCGATTTC CACTCAGTCT CTGGTGGCAT TATCCCAGGC TAGTTTCTTT CACCAGTTAA AAACCTTCAA AATGTTCACT 006960 006961 TTTAACACAA AGTCTTTCTA TAAAAAGTGT GGCTACATTT CCCCCCTCCC CCCACCACCA ATGACTACAT ACACAGATGG 007040 007041 GTAGCAGCAA GAAAAGCTGA AAATAAAAAG GCAACCATGA AAATAAATGG ATCAATTGTA TACAAGAAAT ATTTGGCTCA 007120 007121 TGGCAATTAA AAATGGCAAC TAGGGTATGT TAATAGCCAA AGGCTTCAGT CATTACAGAA TATGTTAAGA GAATGAAGCC 007200 007201 AGTCCAGTAT GACCAAGTAG GAATATATAA TTGTCATTGC ACTTCATTTG TTATAGCAAA TGCTCTAAGC CAATAGGAAA 007280 007281 TCTAAGCTAT ATCTAGATTC TCAATTAGAA CAAGCTGACC TTTAACATTG TCAACAATTT TTACTGGGTT TAGTACATCA 007360 007361 GTCATTTTCT TTACTCAAAC TCCTTTATGA GTCTTTTCCT ATCAATCTAA GGGTATTCTG TGCATAAAAT ACCTTAAATG 007440 007441 ATAAGACTTT TCTAAGGTTC ATTTGAAAAT GGTTGTATAA AAAAAATACC CATTTGTTTT GCCTGGAAAG ATACAAACTA 007520 007521 AATGCAGAAG TTTCTCAAGG GGAAAATCTC ATCTTTCTTC TTCCCGCCAC CTCTGCCACA TTTTGATTTC CTAAACTTTT 007600 007601 CAAGTCTGTT CTCCATGGCT TCTCTAAGGA TAAAACCCAG AGAGCAAACA ATTGAGCTTT AGGACAACTG GAGTTAAAAC 007680 007681 AAACAAACAA ACAAAAAAAG TTAATGGCAA GCAATGGTCC ACATACTCAA GATTCATGTT AAACGAATTC AATTATTACA 007760 007761 TATGGGTTTT TCATTGATGA GTAGGGCCCT GGGCATGCCA TATTATCACG CAAATCATTG CCTTTGAGAC TTTGGACACT 007840 007841 TTTACAGTTT AATTTGCAAA CAGaattttt ataataaatt attttttaaC TAAATCATAT CTTGAAAACT GTTTATAGAA 007920 007921 AACCCAGGGA ATAAAGTGAA CTGTTCATTG TGGAAGGTCT TAAATTATTA CAGTAGAAAA TACAGGCGGT AGAAGATAAC 008000 008001 TGAAAAGACT AATGCAACAT TAGATTCAAA TCTATATCTC CTGTAGCTAC TTAAAACATG GTTTTA |
Predicted Small Protein
Name | NONHSAT093248_smProtein_1376:1594 |
Length | 73 |
Molecular weight | 8112.4266 |
Aromaticity | 0.166666666667 |
Instability index | 40.88625 |
Isoelectric point | 7.74053955078 |
Runs | 10 |
Runs residual | 0.00202757502028 |
Runs probability | 0.0393040098923 |
Amino acid sequence | MLNNTGKSGHPCCVPDIRGKAFSSSPFSMILAVDLSYMAFIMLRYIPSIPSFFEGFYHEG MSNFIKCFFSIN |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEELLLLLEEEEEELHHHHHHHHHHHLLLLLLLLLLLLLLL HHHEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooooo oooooooooooo |