NONHSAT094198
Revision as of 19:42, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094198 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2051 nt |
Genomic location |
chr3+:195427634..195436459 |
Exon number |
3 |
Exons |
195427634..195428540,195435005..195435306,195435618..195436459 |
Genome context |
|
Sequence |
000001 aaaagaatca ccaaaataaa aaatagtaac aatactattg tcaaggatgc aaaggaactg taccactcaa tcactgctgt 000080
000081 gagaatttaa agtggtgcag ccactctggg aaacagcttg gctgtttttt tttatgactg aatgtgcaac tactatatga 000160 000161 tgcagtaatt tcatttttgc acatttatcc cggagaaatg aaaacatata ttcacacaaa acctgtatat gaatgctaat 000240 000241 aAAAGTCAAT Tggccaggtg tggtggctca tgcctgtaat cccagcactt tgggaggctg aggcagtgga tcacctgagg 000320 000321 tcaggagttt gagaccagcc tggccaacgt ggtgaaaact cgtctctact aaaaatacag caattagctg ggtgtaatag 000400 000401 tagccacctg taatcccagc tactggggag gctgaagcag aagaacctct tgaacccggg aggcagaggt tgcagtgagc 000480 000481 tgagatcgta ccactgcact ccagcctggg cgatagagtg agactctgtc tcaaaaaata aaataaaata aataaaaaga 000560 000561 ttagataatc tgcaaagttc ctgtgagcgc tgtcattttg tcactctGGT TTTTCAGATT CTTCCCCTGG AGGCTGGAGT 000640 000641 TTCCAGGATG TCAAAATTAC CTCTGCTTGG GTGAGCTATT TCAAGCAGCT GGGATACCTG TGTCACTCCT GCTGTCTGCC 000720 000721 AGTGACTGCC CAGGTGTCTG CTGGTTCCTC CCCAGGAGTA GGGAGGAACC AGGTGGGCTG GCTGGGATGG GTGGATATTT 000800 000801 AAAGACCAGG CCTTGGACGC TGCAGCACTT CTATCTCTGC TTGATGCCTG CTGCCACGTG GCTGGTCCTC CTCCTCCTGC 000880 000881 TGTGGCTGAG CCTTGGGGTG AAGACAGGCA GCTGCTCCCA ACCCCAGAAC CTTTGCTGTC TTGGGACGGA TCACCGCTGC 000960 000961 AAGAGGGGAA GTTGCTACTG TGATGAATTC TGCCATGTGG CACCAGACTG CCACCCAGAC CACAGTGTCC TCTGCAACCC 001040 001041 TGGTAACTCA CATACAGGCC CGATTCCACC TACAGCAAAG CTGGATGCGA TGGCTGGCAG AGGCAAACCC TTTGCCTGCA 001120 001121 CTTCAGGCCA AAGCCGggat gtggcctaga tggttcctaa ggtccctgac aatcctgaga tcttgCATCT TGTCTATTTC 001200 001201 AGGTCAAAGC TTCTCAGATG ACCAAGATGG TGCTGCAGAT GGTGCTGAGG ATGGAGAACC CACCAAGCCC CGCTAGGAGC 001280 001281 CACCTAGACT GGATGCAGAG CATGGTGAGC TCCCTGCAGG TTCTCTGAGA AGGGGTGGAT GGCAGCCTGC TCCTTGCCTT 001360 001361 TGTGCCCTCC AGGCCCCAAA GTCAGGGAAC CAAAAGAAGA AAGGGGCCGT AGCTAGGGCA GAGCTCCACT GCAATGATTG 001440 001441 TTTTAGGGGT AGGAGCCAGG ATTGCCGtct gtggacactg aaatttgaat ctcatatact tttgtgacaa aacattcttc 001520 001521 ctcttttgtt cttctcctac catctaaaaa tgtagaaaac attcttagcc tatgagttgc acaaaaacag gcagtggcca 001600 001601 gatttggccc atagaccata gtttgctgac ttctgCCCTA AATCATCCTC CATTTCTTTC CTTCTGTGTC CTtgttactg 001680 001681 acaaagccac tttccctaaa atggggtctt tccctgtttg gtgccatgaa gccaatatgc aaaaccgaaa gtgagcctca 001760 001761 agcagtgcag gctttatttg gtggccatgg aattgagaag tgagagcttg gctcacaaat caacttttct gctcgtgaga 001840 001841 cccaggaagt cacagataca gggcatcttt agtgaagggg ctgagcatta aaagcaaggg gaggagtggc caggtgcaat 001920 001921 ggctcactcc cataaaccca gaactttggg aggccaaaat gagaggattg ctgagaccag gagttcgaga ccatcctggt 002000 002001 caacatagtg atacaccccc atctctacaa aaataaaaat gaaaaaagca a |
Predicted Small Protein
Name | NONHSAT094198_smProtein_1571:1753 |
Length | 61 |
Molecular weight | 6707.7379 |
Aromaticity | 0.1 |
Instability index | 49.7583333333 |
Isoelectric point | 8.61309814453 |
Runs | 11 |
Runs residual | 0.0335992907801 |
Runs probability | 0.035530182589 |
Amino acid sequence | MSCTKTGSGQIWPIDHSLLTSALNHPPFLSFCVLVTDKATFPKMGSFPVWCHEANMQNRK |
Secondary structure | LLEELLLLLEEELLLLHHHHLLLLLLLLEEEEEEEELLLLLLLLLLLLEELLLLLLLLLL |
PRMN | - |
PiMo | - |