NONHSAT099997

From LncRNAWiki
Revision as of 20:05, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT099997

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

955 nt

Genomic location

chr5-:1177910..1179415

Exon number

3

Exons

1177910..1178366,1178553..1178669,1179035..1179415

Genome context

Sequence
000001 CGGGTGCCTC TCGCCCTGCA GGACGTGGCT GGCCTGGTCT GCCCCCAGCT GAGCCTCACC TGAGGGAGAG CTGGGGTGGG 000080
000081 CCGCCTCGTT TACGACCGTG TAGTCGTCTT TTGCACACAA AGCCATGTGA GTCCGTACGT GAGTCCTGTG GAAAGACAAG 000160
000161 ACATGGAATA GGAGTGACGT CCGTCCCCAG GCATGAAGTG GAGAGCATCA CGCTGTGTGA GTTAAACACT GGCCAAGCAC 000240
000241 GGTGTGAGTC GGAGCCGGGG ACCTGGCCAG ATGAGGGCTG CGTGCAGCTT TCACACCCCA GGCACGTGAG CACCGCCAAG 000320
000321 CCCAGCCTCA GCCAGCAGCT GCTCTGCAAT GTGGAGTCAC CAGTGGCCCC AAGGATGGCA GTGAGAAGTG AAAGAGAAAT 000400
000401 GGCTGCCCCT GCACCACTTA CCGCGAAGGA GGCTCAAGGC TGGGGGGCCC CTCTGCCTTC CAGTGACCGC CCGTGTCACA 000480
000481 TCCTGACCCG CTCAGCAGag acggccagag gcatggatgc acgctgactc gtggacggcc gctGTTTGAC GAGACCATCA 000560
000561 AGGAGGGAGG AGCACCCGTG GAAAGGCGTG GCAGGGTGGT CGGGGCAGAG GTGTACATCA GCCTATCCAA TGCTCACGGC 000640
000641 TGGAGGACGC CGCGCCCTGT GAATGCTCAC TGAGGACCAT CCCGGGCACT GGGGCTCTCC ATGTGAGAAT GGACAATATG 000720
000721 CTGCCTTCCC AGCTGCCCCA TCCTTCCTGC GAGAGCTTGG GGATGGGTGG CCACAGTGGC ACTGGGGAGA ACACGAGGGC 000800
000801 TCCCCAGCAA GCGTTTTCTC TCATGGAGGT GGCTCTGGTC ACAGCGTCAC TGCAGGGCGC AGCCACGGTG GCGGCCAATG 000880
000881 GAAACTGGGC tcttcttttt cttttttttt ttgagacaga gtctcgctct gtcacccagg ctggagtaca atggc
[back to top]

Predicted Small Protein

Name NONHSAT099997_smProtein_662:913
Length 84
Molecular weight 8884.4772
Aromaticity 0.156626506024
Instability index 48.5771084337
Isoelectric point 5.88922119141
Runs 13
Runs residual 0.0165997322624
Runs probability 0.0381286263639
Amino acid sequence MLTEDHPGHWGSPCENGQYAAFPAAPSFLRELGDGWPQWHWGEHEGSPASVFSHGGGSGH
SVTAGRSHGGGQWKLGSSFSFFF
Secondary structure LLLLLLLLLLLLLLLLLLEEELLLLHHHHHHHLLLLLLLLLLLLLLLLLEEEELLLLLLE
EEEEEEELLLLEEEELLEEEEEL
PRMN -
PiMo -