NONHSAT114200
Revision as of 21:06, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT114200 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1675 nt |
Genomic location |
chr6+:105308324..105309998 |
Exon number |
1 |
Exons |
105308324..105309998 |
Genome context |
|
Sequence |
000001 agctcTGGGG AAGATATGAA TGATGACAAC CTGAAAAAAT TTTTTCATTT ATTTGGTACA ATGCTAAAGT GTCTATGTGA 000080
000081 TGACACAGCC TAGTGGGAAA TCCAAAGGAT TTGACTTTGT AAGTTACAAA AAATTTGGAT ACCTACATTG TGGAAGAAAT 000160 000161 GAACTCAGTG GCGAAAAATC ATATTCATAA GCTCTGCACA GAAGTTGAAC ACTTGAAACA ACAGAAGTTG GAACTTCAAA 000240 000241 AAATTAACCC AATCAAAGGG GTAAATGTGA GCCTGGCTAA CACCAATATA TCTTGGATAT ATTACCAGTG CCAAGATGAT 000320 000321 GCTGGAGTGA GGGAGAAACA AAAGGCTTGT CTTTTTCAGC TTCTCTTCCT CAAAGAGACA AAGCTGTTCC TGAAATGAAT 000400 000401 GGGCACATGT ACGTTGATGA TGTATGTTGG CTGGCCAAGT GAAAGAGAGT CTCACCTGCC CATTCAGGAT ATGAAGGGGC 000480 000481 AGATGGTGGT TGGCATGTGT TTTCCCTGCC AGTGCCGTCC TAAATCAGTT CCAGCTAGTG ACCATTTGTG CCAGTGGTGC 000560 000561 CACAGGCACG GGGAAGACCT CTGTAATCTT CACCTAATCA GATGATACCT AAACCAGTCT GGCAACAAGG TGGTAGAGGT 000640 000641 CAAAGTTTCA AAAGAATACC AGAggctggg cgcagtggct catgcctgta atcccagcac tttgtgaggc caaggcaggc 000720 000721 ggatcacttg aggtcaggag tttgagacca gcctggccaa catggtaaaa ccctgtctct actaaaaata tgtatataca 000800 000801 aaaattagcc gggcgtggtg gtgtgcctct gaaatcccag ctactcggga ggcttaggca ggagaatcgc ttgaacccga 000880 000881 gagacagagg ctgcagtgag ctgagatcct gccattgcac tccagcctgg gtgacagagc gagaccctgt ctcaaaaaaa 000960 000961 aaggaaagga agaaagaaaT ACCAGACGTT ATGGACCAGT CTAGCCCAGG CTCAACCATT TGCAACCTGG CTTCAACTAA 001040 001041 AAATGTTCCA GTCTTGCTTG GCCTCTTATG CTATTCAAAA AGTCAGGATT CCCACTGCTG TACAGAAGTT GGCCCCTCAG 001120 001121 CTTCTCTCAG CTGCTGTTAT CACCATTGCT CTCTAGGCTG TTGCTCCATA TAAATTACCT CCAACGTCCT GTGAGGACCA 001200 001201 AGCCTGGAGT TTGTGGGCAG GGGTAGGAGC CCCCAGCAGC CTCCATGGTG GGCATTGCAT CTCATGCTGG TCACTGTTCA 001280 001281 CCACAGGAGC AGAAGATAAT GGAACAGGTA ATGCTGATGT GAATTGTCAG TTCCAAATTC TGCAATATGA TGCCGTCTCC 001360 001361 CAATAGCTCT GCTTCAAAAT GTATAAAGCT GCAGTACTAC TATCAGCTTA TCACCTCctg tccaacagaa ctttctgcaa 001440 001441 tgatagaaat attctataat ctgcaatgtc caaaatagca tccactaacc aaatggggtt actgggtgct tgaaatgtgg 001520 001521 ctggtgcaac tgaattttaa atttgtatta aagtataagt aatgaaacta attaagttaa atagctgtat gtgccttgtg 001600 001601 gttaccgtat tagacagggc aACTTATCAC ACCAAGAAGA AAGCTGCCCA GGAGAACACC AAAACAGCTA AACAG |
Predicted Small Protein
Name | NONHSAT114200_smProtein_158:397 |
Length | 80 |
Molecular weight | 9213.731 |
Aromaticity | 0.0759493670886 |
Instability index | 40.7936708861 |
Isoelectric point | 9.27227783203 |
Runs | 9 |
Runs residual | 0.0263568579851 |
Runs probability | 0.0311782370606 |
Amino acid sequence | MNSVAKNHIHKLCTEVEHLKQQKLELQKINPIKGVNVSLANTNISWIYYQCQDDAGVREK QKACLFQLLFLKETKLFLK |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEELLLLEEEEEEEELLLLLHHHH HHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |