NONHSAT123886
Revision as of 21:54, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123886 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2106 nt |
Genomic location |
chr7-:143509061..143534026 |
Exon number |
2 |
Exons |
143509061..143510872,143533733..143534026 |
Genome context |
|
Sequence |
000001 CTAGCCTCCA AGACAGCCCC GCCGCCAGAA CAGCCTCTCC TCCAGGACCG GCCAGCCTAC GAGAGAGCCC CGCCTACGGT 000080
000081 ACAACCCGCC TCCGGGACCG CAGGACTCCA CCTCCGAGAC AGCTCAGTCC CCAGGACAGT CCCGCCTCCG AGACGGCCCC 000160 000161 GCCTCCAGGA CGGCCCCTAC CTCCGAGAcc gccccgcctc cgggaccgcc ccgccccgcc tcgcctccga cacgtcccCC 000240 000241 GGGCGCCACT GCAGAGCCTG TCCGTCAGTC CCTAGGTATC CGCACTGCTC AGGGGAGGAT TCCCTGGGAG CACCCACCAG 000320 000321 CTGAGATCTG CACATCAGCC ACAATCCTCT CAGGACGGCG GAAAGGGAAG GGCTCAGCCG CCAGCCTGGC CACAGCCTGC 000400 000401 ATCATCTCAT CCCAGAGGCG GAGCACAGGC TCGGGGTCCT TCAGGGCCTG AAGGTTTGTG GTTGGCACTG TCAGGATGAT 000480 000481 GTTGTCCGTG GCCAGCTCTC CCCAGGGAGC CAGGTTCTCC TGCATCTGCC TCTTCCACTC CTCCAGCGAT GTCTTACCTG 000560 000561 GGAATAAATA TCATGGAACC TACCACACCC ACTTCTCCAA CTTCCCTTGA GCTGAAAAAT ACCATTTGAA CTCTGGAAGA 000640 000641 ACATTGCAAT AATGAACTAC TATCACAGGC GTCTATAGGC TGTAAAGTGA AGAAAAGGCT TCCTGACTCT TCTCTTTGTC 000720 000721 TGCCCTGAAG TCTCCATGGA CACAGGGTAT TCCGTATCTT CTGCCTCCAT GTTCCCTCCC AACAGTTCTT CCTCTTTCTC 000800 000801 TCCACCAAAG CTCATCCCTC TCCCATTTAG CAACCACCCC ACAGTTCCCA CGGCATCTGC CACTCTTCCT CCTCCCTAAA 000880 000881 TGTTCACTCC ACTTACCCAG CTTGTAGTAT GGGGCAGGCA CAGCTCCCCT GATAGTGACA GGCACAGGGC CTAGTTGGCT 000960 000961 GCCCTTGGGC ACGATGACGT AGAGGAGGCC GCCCCAGAGG CAGGAGACTG ACCGCTCAGT CCTGTCCATC CAGCATTGGT 001040 001041 GAGTCACCAC GGGGGCTCGA GATAGCTTCC TGGCCTTGGT AAGGTCATCG GTGTGGCAGC CAATCTGTAC CTGGACAGGT 001120 001121 GATTCCACCA AGCGTTGGAG AAATTAGAGT CTTTGTGATG CTTTGTGATG TGCGTGTGAG GTTGTGTAGA TGGAAGGTAT 001200 001201 TAGACAAACA TGCCCATGAA ACCCCAGCTT CCCTTTTCTA TGTGCTAGGC ATGGAAACTT ATGAAATTTT AGCACTCCAA 001280 001281 AGTCATTTGG ACTTCAAGGC ATTTAAAATC ATTTTTCTAA GGATTTAAAC AGCTCCACTA TAAGTCTTCA CCTGACATGA 001360 001361 ATTGGTGAGA GACCAGGCTG ATCCTGGCAA AGGTCTTGTG TCTTTCTGCC AGGCAAAATC CTGGGTTCTT CTAGCAGGAC 001440 001441 CTAAGCCAGT CTGGGGACGC TGATATTGAG GATGAGCTGG GGGACTCTGC TCTGTCCTCT GTGAACACAC AGGAGGCCCA 001520 001521 TCCAGAGTGA GTGAGGTTGA TTCTCTCTCC CTCTTTGCCC AGAGCTTCCC TTTCTGGCCG CCAGATGGGT GGAGATCTGT 001600 001601 TTTGTCTGGA GTCCTGGAGT TGCTTTTCTT AGGTTTGATA TAAGCAAGCT CCAGAAAGAA TGCTGACAGA AAAGGGACCC 001680 001681 TAGCTGTGGT AGGAAGTGGC CCTCAGAGTC AAGGAGGCAG GATGAATTTA AATTCTGCAT GTAGGGCATA TTTTGGGGAG 001760 001761 TGATGGGATT ATGCACACCC TTCAGGTGTC AAGATAAAGA GATAAaacca gagtttgtgc agaatgagct tgctgacaca 001840 001841 cagcctaaat ttgtaccgca tgtttcatac taactccctc tgagtttgca catgggaccc atgaggaggc atgaagaggt 001920 001921 aactgcccat gcccgaggat tttccagccc ttccttttct ttctatcaat cacctactaa tcacagaatc cactccctac 002000 002001 accttttcta ctaaaataac tctttaaaat aagtacaatg ggacagattt gagctgggct cctgtctcct tgttaatcaa 002080 002081 attgcaataa aatgttttct tttgtt |
Predicted Small Protein
Name | NONHSAT123886_smProtein_1157:1327 |
Length | 57 |
Molecular weight | 6679.9412 |
Aromaticity | 0.125 |
Instability index | 42.6108928571 |
Isoelectric point | 8.73956298828 |
Runs | 8 |
Runs residual | 0.0104410616706 |
Runs probability | 0.0448463169051 |
Amino acid sequence | MLCDVRVRLCRWKVLDKHAHETPASLFYVLGMETYEILALQSHLDFKAFKIIFLRI |
Secondary structure | LLLLLLLHHHHHHHHLLLLLLLLHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHEEL |
PRMN | - |
PiMo | - |