NONHSAT124792

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT124792

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1350 nt

Genomic location

chr8+:6693045..6728126

Exon number

5

Exons

6693045..6693139,6693690..6693743,6699190..6699489,6702284..6702451,6727394..6728126

Genome context

Sequence
000001 GCCCCTTCCC CTGCACGCGG CCCCGCGTCG GGGAGGTTTC CGGCCCGGGG CCCGACTGCG GGTGGCATTT CTGGCTAAGC 000080
000081 CGTTAGGCGC GAATTatatg gagatatata cacacacgta tCTGaaaaca ttctgacgtt ttaaaaacgg agcaccagag 000160
000161 gagggggact tcatctgact tgttcagcac tgtctcccag gccctggcac agagggagca ctcgatacac accgatgggc 000240
000241 tgaaggtgtg aatGGATCTG GGGACTAGAG TGATGGTTAT TTGGCAGACA GCATGCCCCG CCTGGGCAGT AGCCGTGAAG 000320
000321 ACTCTTCTTT TCCTCTCCTC GCCTGCACTC TTTAGGATTG AACAGCATTG GTTCAATGCA TATTCTGGGA GCACAGAGAA 000400
000401 AAAAGGGATC AAGTTCCACC ATTATGCAAA AGGGACTCCT GTAAGCCAGA CCCTGAGCCG TTGTCAAAAC ACAGCTTAAT 000480
000481 CCCCATTCCC TGGGCCCGAG ACCCTGCAGC CCCCACGCTG CCCGGCTTCC GGTCTTACCT GGGGCAACCT GACCAACAAG 000560
000561 AACGCGGAAG GCCAGGAGCC AAAAACAGAG ACTCCTGATG GGTAACAGAA GGAAAAGact tggaggctgc catttctcca 000640
000641 agtagtcctg gAGATTCTCA AATGCTAAAG TTAACCAACA CAGTGCCCTA AGACCAGAAA GGAGAAAAAA TGGAAGTTCT 000720
000721 GGGTCCTGCC AAAGGACTAT TTCACTGAGC AGACTGCTGA GACCTCTGAA TTATGTGGAC ACTTGAGAAT CAGTCATGTG 000800
000801 TTGGggccgg cgtcgtggct catgcctgta atcccagcac tttggcattt tgggaggcca aggcgggtgg atcacctgtg 000880
000881 gtcaggagtt cgagaccagc ctggtcaaca tggtgaaacc ctgtctttac taaaaacaaa aacaaacccc aaaaattagc 000960
000961 caggtatggt ggccggcacc tgtaatccga gctagtcggg aggctgaggc aggagaactg cttgggcttg ggaggcagag 001040
001041 gttgcagtga gccgagattg tgccactgca cttcagcctg ggcgacaaga gtgaaacacc agctcaaaaa aaaaaaaaaa 001120
001121 aaaaaaaaac caaaaaaaaa aaaaCCAAAA TCAGTCACCT GTTGGTTTGT GGATCAAACA AAGTGGAGGT GACATCACTG 001200
001201 AAGCCTAGGA CATCACTCCC CTTTTCCAGG CAGGCTTTGT GGTTCGACCT GTCTCACGTT CCAACCCATG CACCCTAACC 001280
001281 CCCTACTTCT TTACCTCTTC CAATTGAGAC ACAAGATTCA TTTTGGCCCA AAGGAGGTAT ACTTCAAAAG
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Predicted Small Protein

Name NONHSAT124792_smProtein_251:478
Length 76
Molecular weight 8427.6768
Aromaticity 0.12
Instability index 47.8693333333
Isoelectric point 9.69610595703
Runs 9
Runs residual 0.0289361702128
Runs probability 0.0608942275609
Amino acid sequence MDLGTRVMVIWQTACPAWAVAVKTLLFLSSPALFRIEQHWFNAYSGSTEKKGIKFHHYAK
GTPVSQTLSRCQNTA
Secondary structure LLLLLEEEEEELLLLHHHHHHHHHHHHLLLHHHHHHHHHHHHHLLLLLLLLLEEEEEELL
LLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiii
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