NONHSAT128175

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT128175

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1709 nt

Genomic location

chr8-:104278773..104311010

Exon number

5

Exons

104278773..104279748,104280619..104280700,104280920..104281071,104298066..104298130,104310577..104311010

Genome context

Sequence
000001 cggcggcggG ACTGGCCCTG CGCCCGGGCA CCGCCTGCGC TGCGCCGCCC GGCCTCACTC CGCGGCCCGC CAGGACCCGG 000080
000081 CCCCGGTGAA CGGGCTCGGG GTGCCGAGGT CCGGCTGCGG GGCCGGGAAG CCACCTCCAC CTTGCCGTCT GTTACGACCC 000160
000161 CCGAGGCGCA AGGCTGAGCC CCATCTCGCT ATCCGGGTCC GGAGGGGTTC ACCTTAGAAG GATTTTTTGA AGCTCTTGGC 000240
000241 GCTGGCTCTA AAAGAACCCA CTTCCTTGCG GATTTCAGGA GTCAAGAATC CTTAAACGGA GCCAATTTGC TTTGTAAAGC 000320
000321 CAATTGCCCA AGTGACTTGA GTTCGAAAGG AGATACTTCC TGGACAACTG CTATAAAAAC AACAACAAAT ACTTTTATTA 000400
000401 ATTCGGGGAG CCTGGTCACC AACTGGATGC TCAGGGGAGA TGGAACCCTG AGCAGCCCAT GTACATGGAA GATCTTTATT 000480
000481 GCAGAGATCT TCAAACCAGg aaactgaggc taaagagttt agtattctgc caaggccagc taatagttac agagcatggt 000560
000561 tccaaattca gagctgtcgg aagcttaagc ccatgtgatg aaccacGAAT GTGATTttac ctcatttaag ccttgcagca 000640
000641 aactctgcca aCTAGTGTGC ATTTACTCCT GCCTCTCCAT GCCTGAAGGA AGGAATgaag aggtctctgc tgtccatctg 000720
000721 agccagtgac tggGCTGTCT CTACCAGGCC AGAATTTGGG GCAGGCAAGA TTTTCAGCAT CCCTAAAATC ACACTAAGAA 000800
000801 GATAAACATG GAAACAGCTT GGAGCTGCCC TACCCATAGT GAGGTGGTAC TGACTGGAAG ACAGCTTAAA CGATTTGGAG 000880
000881 AAAAGTGGAA TACATTAATC TCAGAAAACT CTACCACCTG TAGAAAGAGA GCTAAAATGG AGACAACCAC AGGCAGTCTA 000960
000961 AGATACGCTG AACTACTACA GAAAATAATG CAGCATGAAG GAATGCTGGA AGGTATGGGG TCAGAGCAAG CTGATGGAGG 001040
001041 GTCCTTCATT TCCAAGCCAC GAGTACAGCA GGATGTAAGG CTTAGTTCAT AAGAACATCT CCTGAAAGAC AATCTCTATA 001120
001121 AAAACTGTTT CAATAGAAAG AATGCAAGAT GTAACTGTTT AATAATAGGA CTGATATTTT AAAAAACAAA TGAACGTAAT 001200
001201 AGAAGACTAG ATGGATGTGC TTCTCAAAGT CCTCTCTGTG GGAGGCTTCA TCCTCACTCT AGATGTGTTG CCtgtagcag 001280
001281 ctgttattga ttacccgccc atagcctatc catacttact catcattcct ttacctacca gtggcatcct attggaagca 001360
001361 cctgcgactt tcttagggct ttctcttggc caagcattgg aaggccagca gtattgaaaa gttaatagtc ttggaagcac 001440
001441 tggccctcaa ctaatgacaa agaaaaaata taagataaat tccccagctt ccttgcctcc tgaatgggtc aagtctgtgg 001520
001521 tgtgttctac ccgtttttca gaggtcccat gttttaaacc ctagctgctc aaggcaattt cctgatcatt gatgtactct 001600
001601 ctattggcta atttttagat aatatggaat atgctcaaaa taggatactc aaagaaaaaa tcagatgcca aaattatgta 001680
001681 caccgaatga gttcaattct gtataagtg
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Predicted Small Protein

Name NONHSAT128175_smProtein_458:613
Length 52
Molecular weight 5950.9355
Aromaticity 0.078431372549
Instability index 40.6823529412
Isoelectric point 8.58917236328
Runs 7
Runs residual 0.0169869928169
Runs probability 0.0435309258839
Amino acid sequence MYMEDLYCRDLQTRKLRLKSLVFCQGQLIVTEHGSKFRAVGSLSPCDEPRM
Secondary structure LLLLLLLLLLHHHHHHHHHHHHHLLLEEEEEELLLEEEEEELLLLLLLLLL
PRMN -
PiMo -