NONHSAT129412
Revision as of 22:16, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129412 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3999 nt |
Genomic location |
chr8-:142250099..142266916 |
Exon number |
9 |
Exons |
142250099..142250679,142254696..142255411,142258752..142258986,142262017..142262675,142262826..142263249,142263280..142263690,142264265..142264277,142264286..142264870,142266540..142266916 |
Genome context |
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Sequence |
000001 ACAGTTTGGA AACTCTTGTT TTAATTGAGA TGTTTCTACG GTAGAGGACA TTTGGAAAAC TTGAAAGAAT TCTCGAGGGC 000080
000081 TGTCGTGTGG AATCGTAGCG ACGTTCAGGG GACGTAAGAA GCAAATACAT AGGTAGCACC ACTTGAACCT TTGGTTCTTA 000160 000161 AGGAATTAGT AGGCATTCTG GTTTCCGCTG CAGCGTGAAA GAAGATGTAG GGAAGAGCTG GGACGTAAGA GCCAGGCGCA 000240 000241 CGGCTTCCTT CCAGAACCTC CTGTACAGCG GAGTCTTCTC CCTCCTGGGG CCCACGTGCC AGGGACCCAC CTTCTCCATC 000320 000321 AGGGCTGTGT GAGAGAGGAG CCGAGTGAAG ACAGCACCTC GAGGTTTCTG GTCTCCTCCA GAGTGAGTGG CAGAGAGCTG 000400 000401 TGTGATCTTG GGTCGGGCCC TCGGGGCACA CGGCTTGCTC GGGGGTCGGG CGGCGGTCCA CAGGGCCATC TGGTGGCCGT 000480 000481 CCCCTGACTC TCTGGCCGGG TTGTTTTCCT CTTTTGCAGA TCATCCAGTC ACTCGATGGG GATTACCAGC GGACCACCTG 000560 000561 TTTGTATCAC CTTCCCACCT CTCTGTAGCA AGAAAAATCA CTTCAGCACC TCTTCAGTAA TAATGATGAA ACTGGTATTA 000640 000641 ACTGAATGGC AATTATGGAT TTTTAACTCT AATTCACAGT AAACCAGCAA GCCATATGTT TAAAATCCAA CCAAAAATCG 000720 000721 TTCTGTGTTG CTGCATGTCT CATACCGTTG TGAGAAGTTG TGAGATAGCC ACTTGTGCAA AGAGGAATGT AAGTGTTACC 000800 000801 TGCCCGAGGA ACACAGCAGA AGCAGAAAGA GAAGACGTCT TAATTTATCA TTACAGATAT ATGAAACATT ATTTATATAG 000880 000881 ATAGAATATA TAGATAAATA CATATATTTT TGGTGGTAAT GAAAATGGCT CCGCAGAATG CCGACCCGGA ATCTATGCAA 000960 000961 GTTATCCGTG CCCCAGCCCT TCTGTGCCAC ACTCTGATTC TTTGTGTGTA AAGTGATTGC ATTCGCAAAC CAACCCTAAG 001040 001041 AGGGTCCCAG GTGTGCTTAG AACAGTGCCT GGCTGTGGGA GATACTGGAA GATGCTGTCA TCTTATCATT GTTGCTGTTG 001120 001121 ACTTGAATCC AAGGTTATTG TGGACAGTAG ATGGCTCAGA GACAGGCATT TCCAAAAGCA TGGAAATTCA CAGGCACGCA 001200 001201 CAGGTGGGCA TGAAAACACG GAAAATCACA GACGCACAGG TGGGCATGAA AACACAGAAA TTCACAGACA CACGCAGGTG 001280 001281 GGCATGAAAA CACGGAAATT CACAGACACA CAGGTGGGCA TGAAAACACG GAAATTCACA GACACGCAGG TGGGCATGAA 001360 001361 AACACGGAAA TTCACAGACC CGCAGTTGCA GGTGGGCGTG AAAACACGGA AATTCACAGA CACTCGCAGG TGGGCGTGAA 001440 001441 AACACGGAAA TTCACAGACA CTCGCAGGTG GGCGTGAAAA CACGGAAATT CACAGACACA GGTGGGTGTG AAAACACGGA 001520 001521 AATTCACAGA CGCACAGGTG GGTGTGAAAA CACGGAAATT CGCGGACACG CACAGGTGGG CGTGAAAACA CGGAAATTCA 001600 001601 CAGACACGCA GGTGGGCATG AAAACACGAA AATTCACAGA CACACAGGTG GATATGAAAA CAGAAATTCA CAGACACGGG 001680 001681 CAGGTGGGCA TGAAAACACG GAAATTCACA GACACGCAGG TGGGCGTGAA ACACGGAAAT TCACAGACGC ACAGGTGGGC 001760 001761 GTGAAAACGG AAATTCACAG ACGCAGGTGG GCATGAAAAC ACGGAAATTC GCAGGTGGGC GTGAAAACAC GGAAATTCAC 001840 001841 AGACGCACAG GTGGGCGTGA AAACACGGAA ATTCACAGAC GCACAGGTGG GCGTGAAAAC ACGGAAATTC ACAGACGCAC 001920 001921 AGGTGGGCGT GAAAACATGG AAATTCACAG ACACGCAGGT GGGCGTGAAA ACACGGAAAT TCACAGACGC GCAGGTGGGC 002000 002001 GTGAAAACAC GGAAATTAAC AGAGACGCAC AGGTTGGCAT GACCAGGCTC GCATGGGCAA GATGTGGTGT CTCTTCCAGA 002080 002081 TTACCGGGCA GCAGAGCGGG GACCCTGTAG GGAGTCCCCA CTGGGAGTGT CTTGGGCCCT AAAAATTTTG TCAGAATGTT 002160 002161 TATTTTCTTT ATGACCTAAG GAAGTTTTAA AAAAATCTGT CATTTTCCAA ACCCTTAGCA ATATAAGGTA TCTGGTAAGA 002240 002241 GGCAGACAGT TTAGAAGCAT CCGTTTTATT CTAGAATTCA ACATATTGCA TGGTAAAGTA TTTTCAAGCC TACTTATTTT 002320 002321 GGTTGTTTTA GGGATGTTTG TTGATACAAA CATAATAAAG TGTTTCTTGT TCCGTGAGCG CTCACTCAGC CTCGCTGCAG 002400 002401 TGCGGATCCC TCGGTTATGT GCACGGATCT GACTCCAGTG TGAAATCGTA GCATTTTCTT TGATTGTGCA CCACCACGCC 002480 002481 CATCTAATTT TTGTATTTTT TGTAGAGATG GGGTTTCACC GTATGTTGCC CAGGCTGGTT TCGAACTTCT GGGCTCAAGC 002560 002561 CATCTGCCCA CCTCAGCCTC GCCAAGTGCT GTAATTACAG ATGTGAGCTA CAGGCCTAGC CTGTTTTGTT TTTTTATATA 002640 002641 TTCTTACACT TTATTGAGAC GAGGTTTTGC TATGTCACCC AGGCCAGTCT TGAACTCTTG GGGAGGTAGC AGCAGCCAGC 002720 002721 AACCCAATGT TGGCTCCTCT TGGAGAATCC AAAAATCGAC CATGTTCCAA GTGTGTAGCC TTACTTATCT CAGCAGATAC 002800 002801 CAGCATCTCC TTTCTTCTGG AAACGTGTGC AGAGTTGACA CATATGATGT GCTTAGAACA GAGCCTGTAA TTGTTAGCTG 002880 002881 TTATTACTGT CATTATCTTT TTCTCCACTT GGGTTCGTAG TCAGCAGCCT TGGTGGTAAC TTGTCGAGGG CCTGCCTCAC 002960 002961 ACTTACTGTG GAAAAGTCAC TCAGTGGGGC AGTTTGCACC TCATTCATTG CACCCCACTC TAGCCCAGCC TCCACCTCCA 003040 003041 CACCGCCCCC CCCCCCCACC CACGTCTTCT TGCTGAATGC GCAGGGATGT CCTCATTTCC AAACTCAGAG GTTTTCTGGG 003120 003121 CCCTGGTGCT GGCCCTGTCT CCCATCGCAC AGGGCTGAGT GGGCCTGGTT TCCGGCTCTG CCCTCCCTCA CTCTTGTCCT 003200 003201 GTGTGTGTCC CGTCCTGAGC CCCGTCGGTG TCACACTGGA CAACTCCAGG GTCTGTCACA TTCAGTATGT TTGAGAGAGC 003280 003281 AGTGCTTTCG AAAATGGTGG CATCTTGGAT TTGATGAAAT ACAGCCCATC TCCAGGCCAG ACTTGTCTCT GCAGCTGTTT 003360 003361 ACTGCTCACA TCCGCCTGGC CTGGCCCCTC TGCATGCTCC CACTCAACGC ACTCCACACA CTTTTTAAAA GCGTGTTGTG 003440 003441 GAACCAGGCT GCTCTGGAAC TCTTTGGGAG CCGACCTTTC CAAAGAGCCA GCCCCCAGTC TCTGAGTCAC GCTCAGCTCC 003520 003521 GTTGGAGCAC CCCTTCCCGC TGGGATGTGT TTTTCCCATG TAGCCTTTTT CCCTCGGGAA GGAGAAGTCC AGTCTCCCCT 003600 003601 CCTGTTGATT GTTTTCTTCT TGGTTCAGGA AGTATACTCA GGGGAAAAGG AAAATCATGT AAAAGAAAAA AGGGGCGTTC 003680 003681 TTTTGTTGCA GTCTCAGTTT GACTCATGAG TTAGAACTGG ATTAACGTGA GAGCCTAACT TCTCTCCACT CGACGAAGAT 003760 003761 CGTGAGCAAT AGAACATCCG AGAATGAATA AGTGACGTCT GCAGATTTAT TTGTGGGGGA AGTCAGGTTT ATTCTTGTCC 003840 003841 GTCTCAATTC AGGAGGCTGG GCGTAATGAC TAAAGCTATG CTCACTTTAT ATCTGTCCAT TTGTTTAAAA CACCAGACTT 003920 003921 TCCATTCTTC ATTGTCGTTT CGTGTGAATC GAGATTCCTA GGATACGGTT TGTTGTAGCT GGAAGCTCGC CTTTTCTTC |
Predicted Small Protein
Name | NONHSAT129412_smProtein_695:883 |
Length | 63 |
Molecular weight | 7373.6783 |
Aromaticity | 0.0967741935484 |
Instability index | 61.0709677419 |
Isoelectric point | 9.03582763672 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0432785726904 |
Amino acid sequence | MFKIQPKIVLCCCMSHTVVRSCEIATCAKRNVSVTCPRNTAEAEREDVLIYHYRYMKHYL YR |
Secondary structure | LLLLLLEEEEEELLLLLEEELLEELLLLLLLEEEELLLLLLHHHHHHHHHHHHHHHHHHH LL |
PRMN | - |
PiMo | - |