NONHSAT133133
Revision as of 22:30, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133133 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3814 nt |
Genomic location |
chr9-:94035854..94039649 |
Exon number |
1 |
Exons |
94035854..94039649 |
Genome context |
|
Sequence |
000001 CTGGGATTAT TTAGATAGAT TTTCCATTGT TGACAGAGTC TAGCTTTTCT GGAATGAACT GTACATGGTA GTGGTATATT 000080
000081 ATTCTTTCAT GCTAAATTGT AATTCTGGAT TCTGTATATG CTTAAATTGG AATGGTATTT TATGCATCCA TTTTTATAGA 000160 000161 TGAGATTATT AGCCCTTAAC ATTTTAAAAG GTATGTGGAA ATCTTAGTAT TAATTTTTAG AGATAGGGTC TTACCCTGTA 000240 000241 ACCTGGAACT CCTGGGCTCA ACTGATCTTC CCATCTCGGC ATTCCAAGTA GCTGGGATTA CAGGTATGCC CTACCACACC 000320 000321 TGGCTGGTTT TTTAAAAAAA TTTTTGTGGA GATGAGTGTC TTGCTATATT GCCCAGGCTG GTCTTGAGCT CCTGGGCTCA 000400 000401 AACGATTTTC CCACCTCAGC TTCCCAAAGT GCTGGCATTA CAGGTGTTGT ATAATACATT TCTTTTAAGA GGTGATTTTA 000480 000481 TCCCATTTTC ACATTCTTTA CTTGGGGAAG AAAACCACAT GGCAAACATA TTTTATAAAC CCATTGTCTT CCAGACTTGT 000560 000561 TTCTTGTCCT CTATGTTCTA TAAGCTATTG TTCTTGAGTC TTGCCAGTGT ATAAGGTGAC AGGTTTTGTT TCCATGGTGC 000640 000641 TATGTTGTAA GTTCAGTGTT TATGTTTTTC TGTGCATATC ACATAAAGAT CCTTTTTTAA AAAAAGTTTA GTGTTTCAGT 000720 000721 ACTTGCATTT TTCTTTAGAT GTGGCGCTGC AAAGTGAGTC AGTAACCTTT GTTGAGTTTC GAAAAAATAA TGACCTGTTA 000800 000801 CAGTGTTTTG TTCTCGTTTG TTATTGTTTG GAAAAAGAGT CCAAAATAAT TTTATTAAAG TCACATTACT CTGTAGATAG 000880 000881 ACATAGGCCA TATTTTTGAG AATTCACATT AATAACAATT TTGTATATGC AATACTCTTT TTTTTTTTTT TTTTTGGGAG 000960 000961 ACAGGGTCTT ACTCTGTCAT CTGCAGTCTC AGCTCACTGC AACCTCTGCC TCTGGGGTTC AGTGGATTCT TGTGCTTCGC 001040 001041 TTTCTCAAGT AGCTGGGATT ACAGGCGTCC GCCACCACAC CCGGCTAATG TTTTTGCAAT TTTAGTAGAG ATAGGGTTTC 001120 001121 ACCATGTTGG CCAGGCTGGT TTCAAACTCC TGGTCTCAAG TGATCCGCCT GCCTTGGCCT TCCAAAATGC TGAGATTATA 001200 001201 GGCATGAGCC ACCGCGCTCG ACCTGTTCCT AATTTTTTTT TCAAATTTTG AAATGCAGAT AATATTATGT ACCCCATTAG 001280 001281 CTTATGGGGT ACGTAAAGGA AATTTGTATT TGATATTGGC TCTGGTTATT ACTTTTGTCC TTCCATGGAC AATCACTTAA 001360 001361 AACCTTTAAT GCATGAAGCT GTATTTTAGA AAGCTATTTT GGTACTAGTC TCAAAGGATA GATTGCTCTA TCTTTCCCAC 001440 001441 CCTAATGAAA CTAGGTCACT GGCATTTGGC ACATCTCCAT GATGTGAGAT TTGATGTTCA GATGTGCTGT CTAGAAATGA 001520 001521 TAATGCATTG TCAGCAAGAC CACTTTTCAT TTCATCAACA TAATTTCCAC TGCCCTGGAA TCAATTTATT CCTTGACCTG 001600 001601 TTAATAATTA CACTTGATCA CTAGCATTTC AGTGGCAGAG AAAGCCTCTG GAAATGGCCA TAGTCATCCT TTTGGGTGAT 001680 001681 AAGTTATGGG ATTTCTGTTC GGCTTGGAGA TTTGGCCTGT TGAAGTGGTT GACATTTTAT GAAAACAAAG GAGCAAACTT 001760 001761 TTACCTGATG CCGTGTTAAG ATTCGCTCTG TCAAGTGGTT GAGAACACTT ATTTAATTAT CTAACTGTAC TTTTGCATTA 001840 001841 CCTTTTTTTA TGGCCAACTT TAAACATGCC TAGGGAAGTT CCCGTTCTAT TCCCAGCCAG AAGCAAGTGT TTGAAAAATG 001920 001921 AGAAATCACC ATAGAGCTCC TCTAAGATTA ATTTTTCACA GGTCCAAGAA TGCCTAATAT TTAAAATGAG CTACTTTGAA 002000 002001 ATCAGTCATG TATCACATCA GTGTTTCAAA AAGAGATTGA GAAAATATGG GCTGTTACAA AACCACTAAC CTCACCTGTT 002080 002081 GCTCCGTGGT GATTTGGAGC CCTGGAGCAG GGCTGCCTGG ATCTGAAACT TTGCTCTGTG GCCTTTTGGG AAAGTGACTT 002160 002161 GCCTCTCTGT GTTTCTGTCC TAATCCTTAA GTGCAAGAGT GGTCATGCAT ATTTTATAGT GGCATTGGGA GGATGACAGG 002240 002241 AATGAATACA TGTAGAAGGC TTTGAAAGGG TTCTGGTAGA TCACCACCCA GTGTGTGTTG TACTAGTCAT CATTGTTACT 002320 002321 GTAACTTAAT GTGTTTTAGT GTTAATGGAT GTCCTTTTTT CTCTTTTGCT ATCCCAGCCC CTTCCTTGCC TAATTGTTAC 002400 002401 TCTCTTCTGT GTGGTTAGGA GCAACTAGTT CAGTTTAATT TCCCTTAGAG AGCAAGTTTC AGATATAGCA TCATTTTGAA 002480 002481 CTACTAAGGA AGTTTAATTC TCCTAGGATT GGTCATATAG CCTTCTTTAG CAAAATTGAA CAGGAACCTT AGGTGAAGCT 002560 002561 TGGTTAGCCA GGTTTATGGA TCTGGGGCCT TTTCTATGCT TTAATTTTAT ATATTTGACT GTTTAGTAGA TGTTTATCTT 002640 002641 CCTTATCTGA AGTTCACTTT CATCTTGTTG TTGTTAACCT ACATAAAGAT TTATTTAATG TGGATTAAGT CCTCTGTTAT 002720 002721 TTAGAAATAT AAATTGAGTT GCCAATCTGA TATTTACTTT CTCAATTTTT ATACACTTGA CTTTGCAGTT ATACATTTTT 002800 002801 TGCTAATTAT TCATAAGGCT TACAACTACT ACTAGTAATT CAACAGAAAA TAAGTACTGT ATTGTAAAAT CCTAAAGGAT 002880 002881 TTGAGTTTTT AATTCAAGTA TATTAAGAAC ACATCCTTAG GTATTGAAAT AAGAACCTTA TAACATCCTG TCATCTTCCA 002960 002961 GTTTGCAGTT TCACCTCTTT GCTAGTGCTG ATGAGGTCAT TGATGTGTCA TCATAACACT CTGAGTGCCA GTAGGGAAGG 003040 003041 AACTGTTTCA TTTGATTGAC TACTGTATTA ACAGTATCTA GCCCATTGCT CATTACATGA TAGGTGCTTA GTAAATATTT 003120 003121 GTTAAATGAA ATAAAATGAT TTTCTCTATA TTTTGTATTT TCTAGGATTT TTAGGAGGCA TACCCAGAAA ATAGGCTTAT 003200 003201 ATATTTTTTT TGGATTTGTT TCTGCTAATA ATCAGTATGC TTTGCACGTT TGTATTCTGT TTCCATTTCT TTTGTTGCTG 003280 003281 TAGTTTGCTT TTCAATAGGC ACAGTTTCAG TACCTGTTTC CCTGCCCTAC ATAACACCTT GAGAGAGACC TTCTCTTGTG 003360 003361 TGCCCGTTAT TTTTAATCCT TAGACTCAAA AGAACAGATT GTCTTTCTTA AATTCAAATA TACCTGGTCA GCCCCTTTTC 003440 003441 CACCTCTGAG AAGAGAGAAA AGAAAGTATA TTAAGATTCT GGAATTATTT GTGTTTTATG GCTGTGCAGA ATTAAAGTGG 003520 003521 CAAAAATTGT TCGTCAAAGA GCTCAGATCC TTTTAAGATG CAAACCACTG AATTTGTTTG TCAGTGATTG CTCTGGAACT 003600 003601 GGAGGTATCC CCCTGCCAAT GCCTGGTTTG GGGGCCACTG TGTAATTATT TTTTACTGAT TTGCCTCATG AATGTACACA 003680 003681 TATGCATGTT ATTTTTGATG CCTTAAAAAC ATCTGTTATA AAGACAGAGG GTTTTAAATA CTTCAATTTG GTACCTTTAT 003760 003761 TTTGAGCGAC CTTAAATAAA TGTAACATTT TCAATGCCAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT133133_smProtein_3236:3382 |
Length | 49 |
Molecular weight | 5629.6476 |
Aromaticity | 0.208333333333 |
Instability index | 51.425 |
Isoelectric point | 7.60333251953 |
Runs | 11 |
Runs residual | 0.0635964912281 |
Runs probability | 0.032840326958 |
Amino acid sequence | MLCTFVFCFHFFCCCSLLFNRHSFSTCFPALHNTLRETFSCVPVIFNP |
Secondary structure | LEEEEEEEEEEELLEELLLLLLLLLLLLHHHHLHHHHHLLEEEEEELL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiii |