NONHSAT134525
Revision as of 22:35, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134525 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2195 nt |
Genomic location |
chr9+:123606767..123615299 |
Exon number |
2 |
Exons |
123606767..123607177,123613516..123615299 |
Genome context |
|
Sequence |
000001 ATTTAACAAA AAAAATCTGG AAATCAGAAT GTTGCTAACT GTGGACAGAG GTCCCAATCA CCCAGATTCA TTATTCTTTG 000080
000081 TTCATTCTAA TGTTGATACT GTGTTTCTCC CTCAGGAAGG CCCTAGCTTT CTTCAGCCCT TGGGTCAGGG TATAACTGAA 000160 000161 GCATTTGAAC ATAATCAAGC ATATGTTTGA CCACTTTGCT GACTGTATTG AAAAAACCCT CACCTTACTC TGAAAGAAGC 000240 000241 ATGGCAACAG TAcaatattg ccgatgcttt ggtagtgata aaagaggtga tgggtgatat aaaatcagcc actcttaagc 000320 000321 ttgctggaaa ctgtgggagg atgtgtgaat gatgcatatt tccctagagc taatgaagaa gttaaaaaaa atcttagtgt 000400 000401 ctgcaaaaca gGCTGTACAT CCTTTTGAAA TCCCAGAGAT CTTCAGTCTC CCTGTGGATT AAGGAGATGT GCAGTATTTA 000480 000481 AAGTGGCTTC AGGAAGGCAT GGAAGAGGAC TGAGTGGGGA AAGCTTTTTG TGCATGCTGC TGGCTACCTC CAGCGGCTGC 000560 000561 CTCCAGCCTC CATCAGCTGC ACTCTGGGGA AGAGGAGGCT GCCTTCTACC TCCCAGCATC TCTGGATTTC ATGTTCCTGT 000640 000641 CAGCACAGAG GAGCTAAATG GCCTGTAGAG GCTGAAGGTC TGAGGCTCCT AAAGCTGGAA GAAAAGGCTG GGCCAGTCAG 000720 000721 GCCAAGCAAG AACACAGTGT AACTTGTCTC TGAGTGCTTC ATGGTTAAGG GGGCTAAGCA GGCACAAGGG CATGAGGATG 000800 000801 GTTATATGTA CAGACTGAGG GGAAGAAGCA GTGAAGATGA GACTTGCCAT CTTCTTGAGT CAGTAGGCCT GCCTCAGGTG 000880 000881 CCTAGGATGT AATTGCTCTG CTGCTTCTCA TGGGGAGGAG TGGCCCTCAT GACCTTGTTT ACCTGGAAGA GTGTGGGATG 000960 000961 AATGCCTCCT CCTATGGGGA CTCGCAAGTG CTTTAGCAAA AGGATAAATT GCTAATTGTG GCATTTCGTG GATCAGCAGG 001040 001041 ATTATTTCTC CTTGCTAAAG AGGATTTTGT TGGTCCTGAA TTCTGAGGAG GTGGGACTAG GAATGGGCTC CATGAGCCTG 001120 001121 TGTATGACTC AGGGAATATT AGGACTTTGG CACAGCCTCA TGGGTTGGGA GTAAGTCTTG GCTCTTCCCT AGCCTGAATG 001200 001201 ACAGACATCA GATCATTCTG GTGCTTTGTC CATGAAGATG TAGATTCTGA GCCCACCCAA CTAATCTTTT CACTTGAGCA 001280 001281 CAGAAACAGC CCCGGGAATC GGACAGACCC GTGTCTTTCA GGTTTGCTTC ACAGAGCCCC AGGGGTTGAC AATAGGTGCC 001360 001361 TTGGAGACTG CCTGCATGGG GATTTTTAAA AAGCTTTCTT TGTTAAAGGT TTGTAAACCA CTCCTCTGAG CCTGTTTTCA 001440 001441 TTTTATAGAT TATTCAGGGA ACTGAACTGC ACAGAGATCC AGAAAGTGGG TAGTGCAGGC TGTAGTGCTG ATAACTACTG 001520 001521 TACTACTTGG ATCTTTGTGC TCCCAAATAC CAAATGGAAG AGGATCTCTG AGAGTCCTTT GCAAAGATCT TGTAGGGACT 001600 001601 TTAGGCTGGG GCCTTCGGAA AATTCCAGAG GATTCCAATG GAGATTTTGA GGGACTGACT CAGAAGAACA AAGAGAATGA 001680 001681 TAATGGTGAT GTCCCTGCTT TTTACAACAG ATCATGTTCT GATATATATG CAAATCTGTG TAAAGTAAAC CCTACCTAAA 001760 001761 ATGTACTGGG GACCCAAGAT GGACTGCCTG TATTGCTTCC AGGATAAAGT CCAATTTCTA GCTCTGGTTT TTATAACCTT 001840 001841 GCTTCAGCTC ACCTTTTCCG TCATCATCCC CTCCATCTCC TCTCCCACGC TGGGAAATGG ATGGCTGCAC TATACTGTGT 001920 001921 GATGTTATTG ctatgttcat gccatcccct ctgcctggaa tgcccttctg caTGAATGCC TGTGAAATGT TGTTGCTCCT 002000 002001 TTGTATGGCC TGGCTTCCGT GGTTGGCAGG AATCTCTTCT TTCGTGGTAT TCCTGTCATC TTTGTGCATC ACAGTCAGCT 002080 002081 TTGTATTCct agcttgtaag ctacttgagg ataggggcat gtctgaatct atttaatctc ttgcacctgT TTGGCAAATT 002160 002161 GATGTTTTAA GTATTTAAAT AACTAAAGCT CTCTC |
Predicted Small Protein
Name | NONHSAT134525_smProtein_1760:1921 |
Length | 54 |
Molecular weight | 6100.194 |
Aromaticity | 0.169811320755 |
Instability index | 49.5603773585 |
Isoelectric point | 6.49078369141 |
Runs | 8 |
Runs residual | 0.00931891394386 |
Runs probability | 0.038475975976 |
Amino acid sequence | MYWGPKMDCLYCFQDKVQFLALVFITLLQLTFSVIIPSISSPTLGNGWLHYTV |
Secondary structure | LLLLLLLLEEELLLHHHHHHHHHHHHHHHHHEEEEEELLLLLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooooo |