NONHSAT136144
Revision as of 22:41, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136144 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2118 nt |
Genomic location |
chrX-:3857910..3865896 |
Exon number |
2 |
Exons |
3857910..3859823,3865693..3865896 |
Genome context |
|
Sequence |
000001 TTCAGCCTCC CAGAGTGCTG GGATTAAGGG TGTGAGCCAC TGCACCTGGC CCCAAAACTT TCATTTTAAA GACCTGTGTT 000080
000081 TTCTGCACAT AGAGCCGCAG AAACTATTAG TACTGGGGAG TACCAAGCAT GATATTTAAG GGCAACACTG ACTATTCTAA 000160 000161 AATGCACGTG TTTTATTTAA GTCTGTGAAA GTACACAGAT AAAGAACAGT ATCAATGTCA TGTGTCACAG GCAGTAGGAC 000240 000241 AGACAGGGAA AACAATGATA TAAGATAGAA CCACATATCC ATGGTCAATT GACTCAATGT GGAAATAATA AGCTTTTCAA 000320 000321 GAAATGGTGT AAGAATAACT GAGTATTCTT CTAGGAATTT TTAAAAAACC CTTTTTTCAT ACTATTTAGA AGGTTTTATC 000400 000401 AAAATGTATC ATAGACGTAA ATGAAAAAGC TGAACTATTA AGCATCTAGG TGAAAACACA TGAACAACTC TTCTTGAACT 000480 000481 TGGTATAGAA AAGATTTTTT AGGGCTGAGC ATGGTGGCTC ATGCTTGTAA TCCCAGCAAT CTGGGAGGCC GAGGCAGGCA 000560 000561 GATTACTTGA GGTCAGGAGT TTGAGAACAG CCTGGCCAAC AATGATGAAA CCCCATCTCT ACAAAAAAAT GCAAAAAAAA 000640 000641 AAAAAAAAAA AAATTAGCCT GGCTTGGTGG CGTGCACCTG TAATCCCAGC TCCTTGGGAG ACTGAGGCAG GAGAATTGCT 000720 000721 TGAATCCAGG AGGTGGAGGT TGCAAAAAAA AAAGAAAAGA AAAGAAAAGA AAAGAAAAGG TTGTTTAGAT AGGACACTAA 000800 000801 AAGCATGAAT CATAATATTT TTAAAAATGG ATGAAGTGGA CTTTATCAAA ATTCAAAATT ATCTTTAAAC AACATCATTA 000880 000881 ATAAAAGAAA AGATAAGCTG CATACTGGGA AAAAACATTA CATAAAATAT ATTTATTATA TATTCAGAAT ATATAAACAA 000960 000961 CTCAATTACA AAAGACAAGC AACTCAACAG ACTACTGACA AAATATATGA ACAAATACTT CACAGAAAAA TAATACACAC 001040 001041 ACACACACTC TCACACACAC GGAGCCAATA GGTATATAAA CAAAGATACC ATCATTATTA GTGATCAGAG CACTGCAAAT 001120 001121 TAAAGACACA ATGAGATATC CCTACATGAC CACGAGCATA AATAACATTT TCAAGCTTGA CAATAACAAG CACTAAATAT 001200 001201 AAAGCAACTA CAACCCTCCT ACATTCACAG TGCAAAGTGA AACGACAACT TTTGAAAAAC AGTGCAGCAT ATGAACCTAA 001280 001281 ACATGTAACC AAGAAAAAAA AATAGAAATA GCCTATAGAC AAAGACGTGT CCACTGATAC CATGCATTTT TATTCATAAT 001360 001361 AGCTCAGACA GGTAAATACC TCCATTGTAA AAATAAATAA ATAAATAAGC TATTCCACTG GGATTATGAA ATTTTTTAAA 001440 001441 AATTTGCACA GTCTCATTAT CCCTGTGTAT TTAATTTTCT CCTCTGGGAG CCTGCAGCAT TTACCTTGGA AGTGCCCCAA 001520 001521 GCAGGTGACT GAGCCAGTTT CACTCACCTT TGGTTGACCT CACCTGGAAA TAATGGGGAA ATTGTATTTT TCTCACATTC 001600 001601 TAAGCACACC TGGTTGACCT ATGATGCAAT AATAATTACA TAGTTGGGTT CTCTGCACCA GATAGCTCCT TCCATTGCAA 001680 001681 AAACATTGCC ATTCATGCAT TTTCACCCCC CAGCTAAACC TCACATGAAG GTCTAAGAAA GAACAGTAGA TTGTGTCAAA 001760 001761 AATCATTGAT TTCTGAGTTG CTGTTTTTTT TAAAAAATGC TAGTGTTTGG TGCCATCTAG TGGGTTCAAT TTGCTATTTA 001840 001841 AGCCACACAA GAAAATCACC ATAACAGAGG GAAGAGAGAG GATCCTTTTA AAATAAATGA AATCAAGAAT TGCTTTTCAA 001920 001921 AAATAAGTGT GGGCCGGGCG TGGTGGCTCA TGCCTGTAAT CTTAGCACTT TGGGAGGCCG AGGCGGGTGG GTCACTTCAG 002000 002001 GTCAGGAGTT CAAGAACAGC CTGGCCAACA TGGTAAAACC CCGTATCTAC TGAAAATACA AAAATTAGCC GGGATGTTGG 002080 002081 CGGGCGCCTG TAGTCCCAGC TACTCAGGAG GCTGAGGC |
Predicted Small Protein
Name | NONHSAT136144_smProtein_1949:2035 |
Length | 29 |
Molecular weight | 3113.5463 |
Aromaticity | 0.107142857143 |
Instability index | 84.9892857143 |
Isoelectric point | 5.89813232422 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0492139198021 |
Amino acid sequence | MPVILALWEAEAGGSLQVRSSRTAWPTW |
Secondary structure | LLHHHHHHHHHLLLLEEELLLLLLLLLL |
PRMN | - |
PiMo | - |