NONHSAT146407
Revision as of 23:29, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT146407 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3298 nt |
Genomic location |
chr17+:18699119..18710027 |
Exon number |
4 |
Exons |
18699119..18700981,18702125..18702256,18707451..18707579,18708854..18710027 |
Genome context |
|
Sequence |
000001 cataactttt attagattat gttgttataa ttgttctatt tttatttctt attaatctct tactgtgcat tatttataaa 000080
000081 ttaagcatta tcataggtat gtacttacag gaaaaaatat agcatatata aggtttggta ttaaccacaa tttgaggcat 000160 000161 ctgctggggg tcttggaatg tatcccctgc agataaggga ggactactat actttatgaa tttattaatg gtaagatcta 000240 000241 gtggcaggtc taataactac tttcaaagca gtggtgagcg taaacaatat gttaagataa ctgcagcaag tatagtacaa 000320 000321 aatgaaaaat gtctgtggtt tctattgtgt cagggtgttt ttaattttac ctatattcat agtttgttgt ctacattcat 000400 000401 aatttaatga tatgctaact actttcaaag cagtggtgag cataaatagt attttgaggc cgtgcgtggt ggcttacgcc 000480 000481 tgtaatccca gcactttggg aggccaaggc gggtgaatca ctgaggttgg gagttcgaga ccagcctgac caacatggag 000560 000561 aaaccccatc tctactaaaa atacaaaatt agctgggcat gatggcgcat gcctgtaatc cctgctactt gggaggctga 000640 000641 ggcaggagaa tcgtttgaac ccgggaggca gaggttgcgg tgagctgaga tcgccccgtt gcatgccagc ctgggcaaca 000720 000721 agagcgaaac tctgtctcaa aaacaaaaaa caaaaccaaa caaaaaacaa aactacaata ttttgaggta actgcagcaa 000800 000801 atatagtaca aaataaaaaa atgcctgtga tttctattgt gtcagggtgt ttttaatttt acctacattc atagtttgtt 000880 000881 gtctacattc ataatttaaa gatatgctaa attttagcca gaggttaatg aaaatgaagg taacattttt ttttaaccca 000960 000961 tcgaggttca cagaaccact gaatctatta gtggacacca ttaattaaac atccatgGTA CTgttgattc ttatttatct 001040 001041 tttatatttc attccaaatg ttgactcctc agagagtcat tttctgatac ccagactaga tccaatttcc ctgttatact 001120 001121 cttcaagcat ctcacacttt tcccttgcag gacttaactc agttggtaat ggtacatttg tgcattggtt gtctgcctct 001200 001201 cttcacctct ttccctgagg aaggagttgg tatctgttag tcactgttgt attaccagca catagtagat gctcagtaaa 001280 001281 tatttgttga gtaaataaaG ATTAGGAAAG CTATCAAACT AATTTATTAC CTTAGTAAGT AGGAAAAGAG CTTGGTAACT 001360 001361 TGAGAGACTG ACTGAAGGCC AGTGTCTATA ATCATTTTCA GGGATATGTA GTTGTAAAAT ACATGTAGCT ATAGTCAGGA 001440 001441 TGTAAAGTAG GTCACAGTAA CCAAATAGCA AGGGGTTTAG GGAAAATTAG GGAACTGGAG AAAGGGCAAA TTGTTCATGA 001520 001521 GGGAAAAGAG AAGGTGTAAT GTTTATGGGT GGACTTGTTG CTTGCTCTGT CACCTCTACC CCTATTAGTC CTGCCATTAC 001600 001601 CATTTTACTT AATCACTTAG CCAGGCCTGA TACATAGTAG TCTTTGCTAA CTGGATATTA TGGAGGTAAA GCTGAAGGTT 001680 001681 TTTGTTTGTG AAATGTTACA CTAAGATAGG AGCTTGTGAT AGATCTTTAA ATAATGCTTT TAAAATGTGC CTGTTTATAT 001760 001761 TAATCTTCAC CAGAATGTCA CAGGTAGACT AATGGTTGGC CTACGTTGGT GGAATCACAT TGATGAAGAT GGAAAGAGCC 001840 001841 ATTGGGTGTT TGAATCTAGA AAGGAGTCCT CTCAAGAGAA TAAAACTGTG TCAGAGGCTG AATCAAGAAT CTTTTGGTTG 001920 001921 GGACTTATTG CCTGTCCAGT ACTGTGGGTG ATATTTGCTT TTAGTGCACT CTTCTCCTTC AGAGTAAAGT GGTTGGCGGT 002000 002001 GGTTATCATG GGTGTGGTGC TACAAGGTGC CAACCTGTAT GGTTACATCA GGTGTAAGGT GCGCAGCAGA AAGCATTTAA 002080 002081 CCAGCATGGC TACTTCATAT TTTGGAAAGC AGTTTTTAAG ACAAAACACT GGAGATGATC AGACTTCCTG AATAGAGAAA 002160 002161 GCTTATGTGC TTTGTTACAT TGGGGAACAA CTGAAGAGAT TCTTGACTCA ACCTTTTAGA GCTTAGTCCA TGTTGCAACG 002240 002241 AGGAGTGTTG GCTTTGTTTT TCCACTTAAA AACTTTATTT ATAAAAAGGA AAAGTAGTTT TCATATTAAG TTTTTATTTC 002320 002321 CTTTCCAGCA GTTGGGGCTA GAAAGTATGT GTTGGCACTA GAAACATTGT CAAGATTTGT TCTGTGGTGT AGGTATGCAC 002400 002401 ATTCCATAGG TATGCACACG GCCATGTAAT ATCAGTATAT CCCAAGTTAA TGAAAGTGTT CATTTACATA GGTAATGGAG 002480 002481 ACCTTTGCAT TTTGATCCAT AGAACATAGG AGGATGTTCT TAGTCTGTCT CAAAGCTCTA TATGTTTACA TATTATTTCT 002560 002561 GTAGATTGTT TTCAGGAGAA AGTTTTGCTT CTATGGTAAG AGTGAGCACT TTGGCTTATG TATAAGTTAG AAATAATTGT 002640 002641 TAGTTTTTAA TATGCACTTC GTGGGGAAAT TTCTTAGACG TATGCAAGCA AGTGAAAACA ATTAGGGCCA GTGGTATTAA 002720 002721 CTACTTTATA AAATTTTATT TTTGTTTGTA AGAAGTCATC TATTTAAGGC CCAGTTAATA TAAGTGGAAT CATCATAGTT 002800 002801 TAAGGAATAC CCAGAGATTG CTGCTGTTCT ATTTATTTTA CAGAAAGGAT AGCTAGATTG AAAGCTCTTC AGTGGACCTT 002880 002881 GAGCTAATAG ATCTTTTACC ACTAAAAGAG CATTATTCTC ATGTCATAAT GAGAATAATA ATTTACATAC TTGGCATAAT 002960 002961 AAATGCCTAA AAGACATTTT ATTTTCTGAA TCTATTTTTT TCTTGCTATA ATGGGGATAT TGTAAATTAT GCATTTGTAT 003040 003041 TAATGGTATT TCTTAAAGCA ATCTATGTAA CTGTAAATTA AACCAATCTA CAAACTATTG TAGGCATCTG TAAATTCTGT 003120 003121 TGTAGGTATT ATAAACTTTG TTGAAGTCTT AATCAGCAGA TTATGTTGTG AATATATTTG TACATTGTTA AAATAGTTTT 003200 003201 TAAGATTATT TGTTTAATTG AATAAGTGTC TTATTGGAGT GATAGCTTTG AAGGTGCAAA Actttatatt tgtataaaat 003280 003281 tctactattt acaaggca |
Predicted Small Protein
Name | NONHSAT146407_smProtein_215:406 |
Length | 64 |
Molecular weight | 7297.4177 |
Aromaticity | 0.142857142857 |
Instability index | 42.2365079365 |
Isoelectric point | 9.50970458984 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0509627274333 |
Amino acid sequence | MNLLMVRSSGRSNNYFQSSGERKQYVKITAASIVQNEKCLWFLLCQGVFNFTYIHSLLST FII |
Secondary structure | LEEEEEELLLLLLLLEELLLLEEEEEEEEELLLLLLHHHHHHHHHHLLLLHHHHHHHHHH HLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH LLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT ooo |