Lnc-SOX2-1:9

Same as ENST00000498731.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	ENST00000498731.1
Source	Gencode19
Same with	lnc-SOX2-1:9,NONHSAT093491
Classification	overlapping(S)
Length	3576 nt
Genomic location	chr3+:181281509..181460261
Exon number	5
Exons	181281509..181281716,181328649..181328717,181417386..181417671,181432973..181433080,181457357..181460261
Genome context
Sequence	000001 CACTACTTCC TTCATTGGAC TGCAAGGTAT TTCTGTTTGG AAAAGTAATG GAGTCCAGTC AACTTCATTG ATCGCCAAGG 000080 000081 ACTGTCAAAA TTATAAAACT TGCTGTGGAG CTCTGACATG CCAGAAGCCG CTAGAAAAAG AAGTTTGACA TTCAGAAACT 000160 000161 TATCAAGAGG TTCTACTCTT TGGATAGAGA CCAAAATCAT ACTTTGAAAA AGCCTGACAG GTTTCTTCGG AAAAGTGGCC 000240 000241 ATCCATGGAA TGAATGAAAT GTTCTCTTTC TATTCCAGGG ATTGCAGTGG CAAAGCTAGG CTAGGTCTTG GAGGCTGGTG 000320 000321 TAAGGCGATG TGGGTGAAGG CAGGAGGCTG ATGGAAAGAC TGGGGGGAAG AAAAGCCGAA ATGGATTCAC GGTGCCTTGG 000400 000401 ATGAAGGACG AGAGGGGAAC TGCAAGCTCC TTCAACTGGT TCTGTCCGGT GAGAAGTGAT CAAGCTTGGG CTGACAAGAG 000480 000481 GCTCAGGGAG CCCTCACGTT CTTTCGCTTT TTTACCTGCC AATCAAACTG CTACAAGACA ACACCCTGAT CTGGCATGGA 000560 000561 CATCGCGGGT CCAAGCCTGT AGCCCCAAAT CGGATAATCT CTGCAGCTGA TAACAAGCAA AAGAGAAGCC AGGCAACAGC 000640 000641 CATATTAAAG AAGAAAACAA TCAACTCTGA GATCCAACTT AGAAATAATG TTTCATTCAA GATAAGGCTC GTGGCTTAGG 000720 000721 AGATTGTGAC CTGGCTTGCA TCATTCTAAG ACTTCTATCG TCTGTTTTCA AAACCCAAGG AGGACCTCCT TTTCTGTGTG 000800 000801 ATAGTTCCTC ATGCTTTGCC AGCCACTGGG TCTTTAAGGA AGCTTGCCAA GAGTTCCCGG CTGGGAAGGA CAGTTCGAGT 000880 000881 TCATCATAGA CAATGAGCTG GCACCACAGT TTAAGTGACT CACCAACCTG GTTGCCCACT TCAAAATGTC AAGAACCACA 000960 000961 CTATCTAATT GAAAGAACTG TGTTTTAGCA AAGTGTAATT GGATCGCCTG GCAAGATCAT CTCAAACTAT GTCTCTGACC 001040 001041 TTGCCTTTCA GTGGCTATTT TGAGCACAAG AGGAGAAAGG AAATGATTCC TGAATTATAT CTTGTTTTTA AAAATTAAGA 001120 001121 TTAATTAATA CTTGGTTTTA TGTTCATTCC ATTGTAGGAA CTTAGTGATT ATTACAAAAC AGTCAAAATA GGTCATAGCA 001200 001201 AAATGAACGT TTAAGATTAG GTTAAAACAT TCCTCTGAAA TTTTAGTATT CACTTTTGAA GTGTCAATTA CTATATTTCT 001280 001281 GTAATTTCTC ATTTTTTTCT TGGCTTAGAG TCAAGATGAA AAATGATATT TGAATCAAAG ACATTGTTTT GTTATATAGC 001360 001361 CACTCCTTTC TAAAATGCAA ATCCACCCTC CCCTCACCAA TGCTTTATTC TTTGTGCGCG CACACACACA CACACACACA 001440 001441 CACACACACA CACACACACA CAGACATACA CAGAACCAGC ACCCAAATGG TAGAGGAGGT CCTTCCAAGA CTTCTAGGAC 001520 001521 CTGGATCATG TAAGCAGTAG ATGAGAAAAT GAAGTAAGAG ATATAGAGTA ATAACAATAA AAGTCAATGA TTTCATTTTA 001600 001601 CAAAAAAGTC ATTGTGTAGT ACTCAGATAT TTTTAAGAGC AAGTATTATT ATGACTAAAG TATATTATAC TTCTAAATTA 001680 001681 TTATGATTCT CATCTAATTT CAAGCCACAC ATAGGCGCCA TTTGAAAGCA TTTTGTGTTA CAACCTATCA ACAAAAATCA 001760 001761 ACTAATAGTT TTATAACGTG CATAGGTTTA CCCCATGGGG AATTAAAATT TTTATCTGCA AGTATTTCTG TTGTTGTGAG 001840 001841 ACTTTAGGAC AAGACAACAT TTGGTGTTAA CATAGAAGAA TATTCTATGG CTTTTTTAGC TTTAAAGTTC ATTACTCTAA 001920 001921 AATAAAGTAC ACGTGGTATT TTTTTCTTCC TAGTGTTCTC TTATTATATG TAGAGTATTT TCGGTTGTTG TTTTTAACGT 002000 002001 ATACATTATT TTTATTAAGT CATTTCATAA AAGATAAGAT ATATACTAAT AGACCCTTGG TTTTCTCCTA ATTTAATTAT 002080 002081 TTCAAGTCAA GCAAAATTGG GCAATTTTCT TTCAGGAAAA AAAAAATATT GAGCATGATT TTGAGGTAAA ACTGATTATT 002160 002161 TACAGCATCT TTTCTCTAAT AGGCTAACAT TTATGATGGA TCTTATTTCA AAGTTGATTA TTCTCAAAGA AAAGTGGAGA 002240 002241 TATTAGAATT TCCGAGTAAA TTGCATTGTT TTAAAAAGTA CTTTAATGCA TTGTTCACAT TGTTGCCAGC TATTGACCAA 002320 002321 AAAAGAGAAG AAGAAAAAAG AAATAAAAAA AGCAGTATCT GCTCCAAACG TCAAGTTTTG CAGTTTGAAA GACTTGTACA 002400 002401 TTATAATTGT TTTTTTCTTT TTTGGAAAGC AGTAGTAATT AATACCAAAG GCATAGACAA TTTAGGGCCA TAACCTCCCT 002480 002481 TCCCCCCTCT CCACCTTTTT TTTTTTTTTT TTTTTTTTTT AACTTTAACC ATGATAGGCA TCTCTGCAAG GTAGGTTTTA 002560 002561 ACATATTTTT TTCCTAATTT TTTTCCCTCC ATTCAGTAAG AAGGATAAGC TTTTAGAGTA CCCAGTCACC GTGGTAACTG 002640 002641 CCAAAAAAAT TCTCCTGAAG TTTGAAGAGG TCAGCTAGCA GGGTCAACAA CCCTGGCCTC TCTCTGAGCT CGGTCTAGCA 002720 002721 TGCCCCAGCC TGCGGTTGGA GTGTCAGGCC AGATCTGACC CTGGGAGGTG GACCATTCTG GCTCTGATAT AAATTTTTCG 002800 002801 AGTCAGTTCA TGGCCTGGAC TCTCCAGGTG GCCTCCAAAA TCGATTTTGA CCCCCTGACC CTGTCTCACG GAGGCATAGC 002880 002881 ATCCACCCTA AGTAAGGATT TAGCCAGGAA TGACAGCTTT CCACTGAGTG TTATTGGGGA CAGTATAAAC AGTTTGGAAA 002960 002961 GCAAGTAAGG AGGTGTGAGG GCTAGCAATC ATTAAAAGCA CATTAAAAAA CAATTTTTAA AAATCTTTAT TAGAGAAAGT 003040 003041 TGTAAATGCA TATCTGTTAC AGAATTCCTG TGATTTGTAG AGTTTTCTAG TCAGTTTTGA ATATAAATAG GTCACATATC 003120 003121 TTTATCTTTT TGCATACTTT GTTACAAATA TGCAAATAAG ATAGGCATAC TTGCTACAAA ATAGGTACAG CAGGAATGTA 003200 003201 ATATGTTCAG AAAAGGCAAA CTGGTTATTA AAACACATTA ACAGGTAAGG AGTTTCTAAT ATTTTAAATA CTAAAATTTT 003280 003281 ACATGTGTAT TTTGAAGTTT TTAAAATGGA AAAATAAAGA ACCTTTAAAA AACCCAACAG TGTGGAATAA AGATAAACTT 003360 003361 GTTGCACTCA AGGTACATTT CTACTTTGTA AAGCAAGAAG CCAATACACT CAGTTGGATA AAAATGAGAG AAAAATTGTA 003440 003441 AATATAGAGA GTTACAGCTT ATAGAGCTGA AGAGGAATAA AACAAAAAAA AGTGTCTCTG AATAACTTTA TGTATTTTCA 003520 003521 ACAGTTTAAG ATATCAGAAA CTTGGAAAAT AAATATGATA TATATATAAA TCATCA

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